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docs: add bib and csl files
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lwjohnst86 committed Mar 8, 2024
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3 changes: 3 additions & 0 deletions vignettes/design.Rmd
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---
title: "Design"
output: rmarkdown::html_vignette
bibliography: references.bib
csl: vancouver.csl
vignette: >
%\VignetteIndexEntry{design}
%\VignetteEngine{knitr::rmarkdown}
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date.

## References

14 changes: 14 additions & 0 deletions vignettes/references.bib
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@Article{Isaksen2023,
author = {Isaksen, Anders Aasted and Sandbæk, Annelli and Bjerg, Lasse},
journal = {Clinical Epidemiology},
title = {Validation of Register-Based Diabetes Classifiers in Danish Data},
year = {2023},
issn = {1179-1349},
month = may,
pages = {569--581},
volume = {Volume 15},
doi = {10.2147/clep.s407019},
publisher = {Informa UK Limited},
}

@Comment{jabref-meta: databaseType:bibtex;}
351 changes: 351 additions & 0 deletions vignettes/vancouver.csl
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<?xml version="1.0" encoding="utf-8"?>
<style xmlns="http://purl.org/net/xbiblio/csl" class="in-text" version="1.0" demote-non-dropping-particle="sort-only" page-range-format="minimal">
<info>
<title>Vancouver</title>
<id>http://www.zotero.org/styles/vancouver</id>
<link href="http://www.zotero.org/styles/vancouver" rel="self"/>
<link href="http://www.nlm.nih.gov/bsd/uniform_requirements.html" rel="documentation"/>
<author>
<name>Michael Berkowitz</name>
<email>[email protected]</email>
</author>
<contributor>
<name>Sean Takats</name>
<email>[email protected]</email>
</contributor>
<contributor>
<name>Sebastian Karcher</name>
</contributor>
<category citation-format="numeric"/>
<category field="medicine"/>
<summary>Vancouver style as outlined by International Committee of Medical Journal Editors Uniform Requirements for Manuscripts Submitted to Biomedical Journals: Sample References</summary>
<updated>2014-09-06T16:03:01+00:00</updated>
<rights license="http://creativecommons.org/licenses/by-sa/3.0/">This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 License</rights>
</info>
<locale xml:lang="en">
<date form="text" delimiter=" ">
<date-part name="year"/>
<date-part name="month" form="short" strip-periods="true"/>
<date-part name="day"/>
</date>
<terms>
<term name="collection-editor" form="long">
<single>editor</single>
<multiple>editors</multiple>
</term>
<term name="presented at">presented at</term>
<term name="available at">available from</term>
<term name="section" form="short">sect.</term>
</terms>
</locale>
<locale xml:lang="fr">
<date form="text" delimiter=" ">
<date-part name="day"/>
<date-part name="month" form="short" strip-periods="true"/>
<date-part name="year"/>
</date>
</locale>
<macro name="author">
<names variable="author">
<name sort-separator=" " initialize-with="" name-as-sort-order="all" delimiter=", " delimiter-precedes-last="always"/>
<label form="long" prefix=", "/>
<substitute>
<names variable="editor"/>
</substitute>
</names>
</macro>
<macro name="editor">
<names variable="editor" suffix=".">
<name sort-separator=" " initialize-with="" name-as-sort-order="all" delimiter=", " delimiter-precedes-last="always"/>
<label form="long" prefix=", "/>
</names>
</macro>
<macro name="chapter-marker">
<choose>
<if type="chapter paper-conference entry-dictionary entry-encyclopedia" match="any">
<text term="in" text-case="capitalize-first"/>
</if>
</choose>
</macro>
<macro name="publisher">
<choose>
<!--discard publisher info for articles-->
<if type="article-journal article-magazine article-newspaper" match="none">
<group delimiter=": " suffix=";">
<choose>
<if type="thesis">
<text variable="publisher-place" prefix="[" suffix="]"/>
</if>
<else-if type="speech"/>
<else>
<text variable="publisher-place"/>
</else>
</choose>
<text variable="publisher"/>
</group>
</if>
</choose>
</macro>
<macro name="access">
<choose>
<if variable="URL">
<group delimiter=": ">
<text term="available at" text-case="capitalize-first"/>
<text variable="URL"/>
</group>
</if>
</choose>
</macro>
<macro name="accessed-date">
<choose>
<if variable="URL">
<group prefix="[" suffix="]" delimiter=" ">
<text term="cited" text-case="lowercase"/>
<date variable="accessed" form="text"/>
</group>
</if>
</choose>
</macro>
<macro name="container-title">
<choose>
<if type="article-journal article-magazine chapter paper-conference article-newspaper review review-book entry-dictionary entry-encyclopedia" match="any">
<group suffix="." delimiter=" ">
<choose>
<if type="article-journal review review-book" match="any">
<text variable="container-title" form="short" strip-periods="true"/>
</if>
<else>
<text variable="container-title" strip-periods="true"/>
</else>
</choose>
<choose>
<if variable="URL">
<text term="internet" prefix="[" suffix="]" text-case="capitalize-first"/>
</if>
</choose>
</group>
<text macro="edition" prefix=" "/>
</if>
<!--add event-name and event-place once they become available-->
<else-if type="bill legislation" match="any">
<group delimiter=", ">
<group delimiter=". ">
<text variable="container-title"/>
<group delimiter=" ">
<text term="section" form="short" text-case="capitalize-first"/>
<text variable="section"/>
</group>
</group>
<text variable="number"/>
</group>
</else-if>
<else-if type="speech">
<group delimiter=": " suffix=";">
<group delimiter=" ">
<text variable="genre" text-case="capitalize-first"/>
<text term="presented at"/>
</group>
<text variable="event"/>
</group>
</else-if>
<else>
<group delimiter=", " suffix=".">
<choose>
<if variable="collection-title" match="none">
<group delimiter=" ">
<label variable="volume" form="short" text-case="capitalize-first"/>
<text variable="volume"/>
</group>
</if>
</choose>
<text variable="container-title"/>
</group>
</else>
</choose>
</macro>
<macro name="title">
<text variable="title"/>
<choose>
<if type="article-journal article-magazine chapter paper-conference article-newspaper review review-book entry-dictionary entry-encyclopedia" match="none">
<choose>
<if variable="URL">
<text term="internet" prefix=" [" suffix="]" text-case="capitalize-first"/>
</if>
</choose>
<text macro="edition" prefix=". "/>
</if>
</choose>
<choose>
<if type="thesis">
<text variable="genre" prefix=" [" suffix="]"/>
</if>
</choose>
</macro>
<macro name="edition">
<choose>
<if is-numeric="edition">
<group delimiter=" ">
<number variable="edition" form="ordinal"/>
<text term="edition" form="short"/>
</group>
</if>
<else>
<text variable="edition" suffix="."/>
</else>
</choose>
</macro>
<macro name="date">
<choose>
<if type="article-journal article-magazine article-newspaper review review-book" match="any">
<group suffix=";" delimiter=" ">
<date variable="issued" form="text"/>
<text macro="accessed-date"/>
</group>
</if>
<else-if type="bill legislation" match="any">
<group delimiter=", ">
<date variable="issued" delimiter=" ">
<date-part name="month" form="short" strip-periods="true"/>
<date-part name="day"/>
</date>
<date variable="issued">
<date-part name="year"/>
</date>
</group>
</else-if>
<else-if type="report">
<date variable="issued" delimiter=" ">
<date-part name="year"/>
<date-part name="month" form="short" strip-periods="true"/>
</date>
<text macro="accessed-date" prefix=" "/>
</else-if>
<else-if type="patent">
<group suffix=".">
<group delimiter=", ">
<text variable="number"/>
<date variable="issued">
<date-part name="year"/>
</date>
</group>
<text macro="accessed-date" prefix=" "/>
</group>
</else-if>
<else-if type="speech">
<group delimiter="; ">
<group delimiter=" ">
<date variable="issued" delimiter=" ">
<date-part name="year"/>
<date-part name="month" form="short" strip-periods="true"/>
<date-part name="day"/>
</date>
<text macro="accessed-date"/>
</group>
<text variable="event-place"/>
</group>
</else-if>
<else>
<group suffix=".">
<date variable="issued">
<date-part name="year"/>
</date>
<text macro="accessed-date" prefix=" "/>
</group>
</else>
</choose>
</macro>
<macro name="pages">
<choose>
<if type="article-journal article-magazine article-newspaper review review-book" match="any">
<text variable="page" prefix=":"/>
</if>
<else-if type="book" match="any">
<text variable="number-of-pages" prefix=" "/>
<choose>
<if is-numeric="number-of-pages">
<label variable="number-of-pages" form="short" prefix=" " plural="never"/>
</if>
</choose>
</else-if>
<else>
<group prefix=" " delimiter=" ">
<label variable="page" form="short" plural="never"/>
<text variable="page"/>
</group>
</else>
</choose>
</macro>
<macro name="journal-location">
<choose>
<if type="article-journal article-magazine review review-book" match="any">
<text variable="volume"/>
<text variable="issue" prefix="(" suffix=")"/>
</if>
</choose>
</macro>
<macro name="collection-details">
<choose>
<if type="article-journal article-magazine article-newspaper review review-book" match="none">
<choose>
<if variable="collection-title">
<group delimiter=" " prefix="(" suffix=")">
<names variable="collection-editor" suffix=".">
<name sort-separator=" " initialize-with="" name-as-sort-order="all" delimiter=", " delimiter-precedes-last="always"/>
<label form="long" prefix=", "/>
</names>
<group delimiter="; ">
<text variable="collection-title"/>
<group delimiter=" ">
<label variable="volume" form="short"/>
<text variable="volume"/>
</group>
</group>
</group>
</if>
</choose>
</if>
</choose>
</macro>
<macro name="report-details">
<choose>
<if type="report">
<text variable="number" prefix="Report No.: "/>
</if>
</choose>
</macro>
<citation collapse="citation-number">
<sort>
<key variable="citation-number"/>
</sort>
<layout prefix="(" suffix=")" delimiter=",">
<text variable="citation-number"/>
</layout>
</citation>
<bibliography et-al-min="7" et-al-use-first="6" second-field-align="flush">
<layout>
<text variable="citation-number" suffix=". "/>
<group delimiter=". " suffix=". ">
<text macro="author"/>
<text macro="title"/>
</group>
<group delimiter=" " suffix=". ">
<group delimiter=": ">
<text macro="chapter-marker"/>
<group delimiter=" ">
<text macro="editor"/>
<text macro="container-title"/>
</group>
</group>
<text macro="publisher"/>
<group>
<text macro="date"/>
<text macro="journal-location"/>
<text macro="pages"/>
</group>
</group>
<text macro="collection-details" suffix=". "/>
<text macro="report-details" suffix=". "/>
<text macro="access"/>
</layout>
</bibliography>
</style>

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