add index files and remove articles for all sessions

steno-aarhus · Dec 5, 2023 · 9f87994 · 9f87994
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diff --git a/sessions/2023-05-25/index.qmd b/sessions/2023-05-25/index.qmd
@@ -0,0 +1,7 @@
+---
+title: "Introduction to GitHub"
+description: "A gentle introduction to using the Steno Aarhus GitHub."
+date: 2023-05-25
+---
+
+Available [here](slides.pdf).
diff --git a/sessions/2023-05-25/github_intro.pdf → sessions/2023-05-25/slides.pdf b/sessions/2023-05-25/github_intro.pdf → sessions/2023-05-25/slides.pdf
diff --git a/sessions/2023-06-23/Distance_screening_non-partic_Jensen_2013_JPH.pdf b/sessions/2023-06-23/Distance_screening_non-partic_Jensen_2013_JPH.pdf
diff --git a/sessions/2023-06-23/Presenting_effect_modif_interact_Knol_2012_IJE.pdf b/sessions/2023-06-23/Presenting_effect_modif_interact_Knol_2012_IJE.pdf
diff --git a/sessions/2023-06-23/effmod_analysis.do → sessions/2023-06-23/code.do b/sessions/2023-06-23/effmod_analysis.do → sessions/2023-06-23/code.do
diff --git a/sessions/2023-06-23/index.qmd b/sessions/2023-06-23/index.qmd
@@ -0,0 +1,42 @@
+---
+title: "Effect modification in epidemiologic studies – a template for analysis"
+description: "Discussing how to do effect modification analysis."
+date: "2023-06-23"
+references:
+- type: article-journal
+  id: Knol2012
+  author:
+  - family: Knol
+    given: Mirjam
+  - family: VanderWeele
+    given: Tyler
+  issued: 2012
+  title: 'Recommendations for presenting analyses of effect modification and interaction'
+  DOI: 10.1093/ije/dyr218
+- type: article-journal
+  id: Jensen2013
+  author:
+  - family: Jensen
+    given: L.F
+  - family: Pedersen
+    given: A.F
+  - family: Andersen
+    given: B.
+  - family: Fenger-Grøn
+    given: M.
+  - family: Vedsted
+    given: P.
+  issued: 2013
+  title: 'Distance to screening site and non-participation in screening for breast cancer: a population-based study'
+  DOI: 10.1093/pubmed/fdt068
+---
+
+
+Files from session:
+
+- [Slides](slides.pdf)
+- Stata [code](code.do)
+- Stata [output](output.log)
+- Data, as [`.dta`](partic_data_dist.dta) or [`.xlsx`](partic_data_dist.xlsx)
+
+Articles discussed were [@Knol2012] and [@Jensen2013].
diff --git a/sessions/2023-06-23/effmod_analysis.log → sessions/2023-06-23/output.log b/sessions/2023-06-23/effmod_analysis.log → sessions/2023-06-23/output.log
diff --git a/...3-06-23/effect_modification_HS_8Jun23.pdf → sessions/2023-06-23/slides.pdf b/...3-06-23/effect_modification_HS_8Jun23.pdf → sessions/2023-06-23/slides.pdf
diff --git a/sessions/2023-08-31/bl_change_ancova.do → sessions/2023-08-31/code.do b/sessions/2023-08-31/bl_change_ancova.do → sessions/2023-08-31/code.do
diff --git a/sessions/2023-08-31/index.qmd b/sessions/2023-08-31/index.qmd
@@ -0,0 +1,30 @@
+---
+title: "Analysis of change from baseline and/or ANCOVA?"
+description: "Which to choose? A discussion on statistical methods to use."
+date: "2023-08-31"
+references:
+- type: article-journal
+  id: Wright2020
+  author:
+  - family: Wright
+    given: Daniel B.
+  issued: 2020
+  title: "Allocation to groups: Examples of Lord's paradox"
+  DOI: 10.1111/bjep.12300
+- type: article-journal
+  id: Senn2006
+  author:
+  - family: Senn
+    given: Stephen
+  issued: 2006
+  title: "Change from baseline and analysis of covariance revisited"
+  DOI: 10.1002/sim.2682
+---
+
+Files from session:
+
+- [Slides](slides.pdf)
+- Stata [code](code.do)
+- Stata [output](output.log)
+
+Articles discussed were [@Wright2020] and [@Senn2006].
diff --git a/sessions/2023-08-31/bl_change_ancova.log → sessions/2023-08-31/output.log b/sessions/2023-08-31/bl_change_ancova.log → sessions/2023-08-31/output.log
diff --git a/sessions/2023-08-31/senn-2026-paper.pdf b/sessions/2023-08-31/senn-2026-paper.pdf
diff --git a/...1/HStovring_analysis_of_change_230830.pdf → sessions/2023-08-31/slides.pdf b/...1/HStovring_analysis_of_change_230830.pdf → sessions/2023-08-31/slides.pdf
diff --git a/sessions/2023-08-31/wright-2019-paper.pdf b/sessions/2023-08-31/wright-2019-paper.pdf
diff --git a/sessions/2023-09-14/20-STS778.pdf b/sessions/2023-09-14/20-STS778.pdf
diff --git a/sessions/2023-09-14/Box-AnalysisTransformations-1964.pdf b/sessions/2023-09-14/Box-AnalysisTransformations-1964.pdf
diff --git a/sessions/2023-09-14/index.qmd b/sessions/2023-09-14/index.qmd
@@ -0,0 +1,31 @@
+---
+title: "Box Cox transformation."
+description: "A discussion and reading of articles on the Box-Cox transformation."
+date: "2023-09-14"
+references:
+- type: article-journal
+  id: Cox1964
+  author:
+  - family: Box
+    given: G. E. P.
+  - family: Cox
+    given: D. R.
+  issued: 1964
+  title: 'An Analysis of Transformations'
+  URL: "https://www.jstor.org/stable/2984418"
+- type: article-journal
+  id: Atkinson2021
+  author:
+  - family: Atkinson
+    given: Anthony C.
+  - family: Riani
+    given: Marco
+  - family: Corbellini
+    given: Aldo
+  issued: 2021
+  title: 'The Box–Cox Transformation: Review and Extensions'
+  DOI: 10.1214/20-STS778
+---
+
+
+Articles discussed were [@Cox1964] and [@Atkinson2021].
diff --git a/sessions/2023-09-28/index.qmd b/sessions/2023-09-28/index.qmd
@@ -0,0 +1,18 @@
+---
+draft: true
+title: "Transportability"
+description: ""
+date: "2023-09-28"
+references:
+- type: article-journal
+  id: WatsonCrick1953
+  author:
+  - family: Watson
+    given: J. D.
+  - family: Crick
+    given: F. H. C.
+  issued: 1953
+  title: 'Molecular structure of nucleic acids: a structure for
+    deoxyribose nucleic acid'
+  DOI: 10.1038/171737a0
+---
diff --git a/sessions/2023-09-28/transportability.md b/sessions/2023-09-28/transportability.md
diff --git a/sessions/2023-10-12/index.qmd b/sessions/2023-10-12/index.qmd
@@ -0,0 +1,18 @@
+---
+draft: true
+title: "Target trials and case-control studies"
+description: ""
+date: "2023-10-12"
+references:
+- type: article-journal
+  id: WatsonCrick1953
+  author:
+  - family: Watson
+    given: J. D.
+  - family: Crick
+    given: F. H. C.
+  issued: 1953
+  title: 'Molecular structure of nucleic acids: a structure for
+    deoxyribose nucleic acid'
+  DOI: 10.1038/171737a0
+---
diff --git a/sessions/2023-10-12/target-trials-and-cc-studies.md b/sessions/2023-10-12/target-trials-and-cc-studies.md
diff --git a/sessions/2023-10-26/dags.md b/sessions/2023-10-26/dags.md
diff --git a/sessions/2023-10-26/index.qmd b/sessions/2023-10-26/index.qmd
@@ -0,0 +1,18 @@
+---
+draft: true
+title: "Directed Acyclic Graphs"
+description: ""
+date: "2023-10-26"
+references:
+- type: article-journal
+  id: WatsonCrick1953
+  author:
+  - family: Watson
+    given: J. D.
+  - family: Crick
+    given: F. H. C.
+  issued: 1953
+  title: 'Molecular structure of nucleic acids: a structure for
+    deoxyribose nucleic acid'
+  DOI: 10.1038/171737a0
+---
diff --git a/sessions/2023-11-09/index.qmd b/sessions/2023-11-09/index.qmd
@@ -0,0 +1,18 @@
+---
+draft: true
+title: "Selection bias"
+description: ""
+date: "2023-11-09"
+references:
+- type: article-journal
+  id: WatsonCrick1953
+  author:
+  - family: Watson
+    given: J. D.
+  - family: Crick
+    given: F. H. C.
+  issued: 1953
+  title: 'Molecular structure of nucleic acids: a structure for
+    deoxyribose nucleic acid'
+  DOI: 10.1038/171737a0
+---
diff --git a/sessions/2023-11-09/selection-bias.md b/sessions/2023-11-09/selection-bias.md
diff --git a/sessions/2023-11-23/immortal_t_bias.md b/sessions/2023-11-23/immortal_t_bias.md
diff --git a/sessions/2023-11-23/index.qmd b/sessions/2023-11-23/index.qmd
@@ -0,0 +1,18 @@
+---
+draft: true
+title: "Immortal time bias"
+description: ""
+date: "2023-11-23"
+references:
+- type: article-journal
+  id: WatsonCrick1953
+  author:
+  - family: Watson
+    given: J. D.
+  - family: Crick
+    given: F. H. C.
+  issued: 1953
+  title: 'Molecular structure of nucleic acids: a structure for
+    deoxyribose nucleic acid'
+  DOI: 10.1038/171737a0
+---
diff --git a/sessions/2023-12-07/incidence-prevalence-mortality.md b/sessions/2023-12-07/incidence-prevalence-mortality.md
diff --git a/sessions/2023-12-07/index.qmd b/sessions/2023-12-07/index.qmd
@@ -0,0 +1,18 @@
+---
+draft: true
+title: "Incidence and prevalence of mortality"
+description: ""
+date: "2023-12-07"
+references:
+- type: article-journal
+  id: WatsonCrick1953
+  author:
+  - family: Watson
+    given: J. D.
+  - family: Crick
+    given: F. H. C.
+  issued: 1953
+  title: 'Molecular structure of nucleic acids: a structure for
+    deoxyribose nucleic acid'
+  DOI: 10.1038/171737a0
+---