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hotfix row and column ordering when grouping converting them to factors #218

hotfix row and column ordering when grouping converting them to factors

hotfix row and column ordering when grouping converting them to factors #218

Triggered via pull request January 13, 2025 09:58
Status Failure
Total duration 8m 44s
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R-CMD-check.yml

on: pull_request
Matrix: R-CMD-check
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1 error and 17 warnings
macOS-latest (release)
Failed to get R 4.4.2: Failed to get R 4.4.2: Failed to download version 4.4.2: Error: Unexpected HTTP response: 404
ubuntu-20.04 (release)
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v2. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
macOS-latest (release)
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v2. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
windows-latest (release)
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v2. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
r-lib/actions/setup-r@v1 is deprecated.
r-lib/actions/setup-r@v1 is deprecated. Please update your workflow to use the 'v2' version. Also look at the examples at https://github.com/r-lib/actions/tree/v2/examples because '@v2' workflows are much simpler than 'v1' workflows.
macOS-latest (release)
pkgconf 2.3.0_1 is already installed and up-to-date. To reinstall 2.3.0_1, run: brew reinstall pkgconf
macOS-latest (release)
No files were found with the provided path: check. No artifacts will be uploaded.
r-lib/actions/setup-r@v1 is deprecated.
r-lib/actions/setup-r@v1 is deprecated. Please update your workflow to use the 'v2' version. Also look at the examples at https://github.com/r-lib/actions/tree/v2/examples because '@v2' workflows are much simpler than 'v1' workflows.
windows-latest (release)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4:
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4:
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4:
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.4:
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/books/bin/windows/contrib/4.4:
r-lib/actions/setup-pandoc@v1 is deprecated.
r-lib/actions/setup-pandoc@v1 is deprecated. Please update your workflow to use the 'v2' version.
r-lib/actions/setup-r@v1 is deprecated.
r-lib/actions/setup-r@v1 is deprecated. Please update your workflow to use the 'v2' version. Also look at the examples at https://github.com/r-lib/actions/tree/v2/examples because '@v2' workflows are much simpler than 'v1' workflows.
ubuntu-20.04 (release)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
r-lib/actions/setup-pandoc@v1 is deprecated.
r-lib/actions/setup-pandoc@v1 is deprecated. Please update your workflow to use the 'v2' version.