Following changes to get rid of Canonicalization #38
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This is a rough way to get rid of canonicalization in squeakr, but I suggest that you add an option for noncanonical counting that can get rid of the reverse complement steps in the count.cc script when chosen.
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This is a rough way to get rid of canonicalization in squeakr, but I suggest that you add an option for noncanonical counting that can get rid of the reverse complement steps in the count.cc script when chosen.