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  1. vnet-keras vnet-keras Public

    Bash and python scripts to run a keras-implemented V-Net 3D segmentation model.

    Python 9 4

  2. rainbow rainbow Public

    A pipeline for rare genetic disease analysis.

    Python 2 1

  3. scBSC scBSC Public

    Calculate spatial correlation between two genes of a Seurat-format spatial scRNA-seq data

    R

  4. mutationtimer_pipeline mutationtimer_pipeline Public

    Pipeline for feeding Isabl data into MutationTimeR (https://github.com/gerstung-lab/MutationTimeR)

    Python 1

  5. tumor-seg-web tumor-seg-web Public

    Brain tumor segmentation web service to predict the segmentation of 3D brain MRI images.

    Python 3

  6. shahcompbio/ontmont shahcompbio/ontmont Public

    ONT split read analysis

    Python 1