Merge pull request #1451 from sorgerlab/doc_fix

Documentation fixes
sorgerlab · Jun 25, 2024 · 0a1810c · 0a1810c
2 parents 8368d07 + 5eaccaa
commit 0a1810c
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Showing 2 changed files with 7 additions and 3 deletions.
diff --git a/doc/conf.py b/doc/conf.py
@@ -312,7 +312,8 @@
     'pygraphviz', 'jnius', 'jnius_config', 'flask',
     'objectpath', 'lxml', 'lxml.etree', 'lxml.builder',
     'functools32', 'ndex2', 'ndex2.client', 'ndex2.nice_cx_network',
-    'nltk', 'kappy', 'openpyxl', 'reportlab', 'reportlab.lib', 'reportlab.lib.enums',
+    'nltk', 'nltk.stem', 'nltk.stem.snowball', 'kappy', 'openpyxl',
+    'reportlab', 'reportlab.lib', 'reportlab.lib.enums',
     'reportlab.lib.pagesizes', 'reportlab.platypus', 'reportlab.lib.styles',
     'reportlab.lib.units'
     ]

diff --git a/indra/assemblers/html/assembler.py b/indra/assemblers/html/assembler.py
@@ -194,7 +194,10 @@ class HtmlAssembler(object):
         the default ones present in indra/resources/source_info.json
         The structure of the input must conform to:
 
-        {
+        .. code-block:: json
+
+          {
+
             "source_key": {
                 "name": "Source Name",
                 "link": "<url>",
@@ -206,7 +209,7 @@ class HtmlAssembler(object):
                 }
             },
             ...
-        }
+          }
 
         Where <text color> and <badge color> must be color names or color
         codes allowed in an html document per the CSS3 specification: