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add missing caculation #3

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add missing caculation #3

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14 changes: 7 additions & 7 deletions DNAcalc2.py
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Original file line number Diff line number Diff line change
Expand Up @@ -30,18 +30,18 @@
#Get Length of sequence
SeqLength=len(DNAseq)

GC_count=0
Missing_count=0

#Go through each base
for Base in ('A','G','T','C', 'N'):
for Base in ('A','G','T','C', 'N','?'):
#Count the number of times the base occurs
NumBase=DNAseq.count.upper(Base)
Missing_NumBase=DNAseq.count(Base)

#print("Percent %s: %.2f" %(Base,NumBase/SeqLength*100))
#Count Gs and Cs
if Base == "G" or Base == "C":
GC_count+=NumBase
if Base == "?":
Missing_count+=Missing_NumBase
#End of for Base in loop.
#print ("Sequence is %d bp long" %(SeqLength))
print ("GC content of %s is %.2f" %(Record.id, GC_count/SeqLength*100))
#End for Record in loop.
print ("Missing data of %s is %.2f" %(Record.id, Missing_count/SeqLength*100))
#End for Record in loop.