feat: Add configurable protocol support to ensembl reference download#2649

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pettyalex wants to merge 5 commits intosnakemake:masterfrom belowlab:add_http_protocol_support_vep_ensembl

+145-25

Commits on Feb 15, 2024

Add the support for configurable protocol, ftp, http, or https to ensembl reference data download and vep cache download.
pettyalex
committed

Commits on Feb 19, 2024

Commits on Feb 22, 2024

Split off https into different snakemake files to avoid name collision. Add each new test case to test.py.
pettyalex
committed

Commits on Feb 23, 2024

Fix tests for annotation and make https protocol output gzipped.
pettyalex
committed