Merge branch 'list_candidates' of github.com:jeffhsu3/snakemake-stora…

…ge-plugin-gcs into list_candidates

CHANGELOG.md

@@ -1,5 +1,12 @@
 # Changelog
 
+## [0.1.4](https://github.com/snakemake/snakemake-storage-plugin-gcs/compare/v0.1.3...v0.1.4) (2024-03-08)
+
+
+### Bug Fixes
+
+* repair GCS query string ([#26](https://github.com/snakemake/snakemake-storage-plugin-gcs/issues/26)) ([f61e8d0](https://github.com/snakemake/snakemake-storage-plugin-gcs/commit/f61e8d0e3b83d3b03ad2eb41ceb0c5902345ef48))
+
 ## [0.1.3](https://github.com/snakemake/snakemake-storage-plugin-gcs/compare/v0.1.2...v0.1.3) (2023-12-20)
 
 

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "snakemake-storage-plugin-gcs"
-version = "0.1.3"
+version = "0.1.4"
 description = "A Snakemake storage plugin for Google Cloud Storage"
 authors = [
     "Vanessa Sochat <[email protected]>",
@@ -14,14 +14,16 @@ keywords = ["snakemake", "storage", "plugin", "google cloud storage"]
 
 [tool.poetry.dependencies]
 python = "^3.11"
+snakemake-interface-common = "^1.14.2"
+snakemake-interface-storage-plugins = "^3.0.0"
 google-cloud-storage = "^2.12.0"
 google-crc32c = "^1.1.2"
 
 [tool.poetry.group.dev.dependencies]
 black = "^23.9.1"
 flake8 = "^6.1.0"
 coverage = "^7.3.1"
-pytest = "^7.4.2"
+pytest = ">=7.4.2,<9.0.0"
 snakemake = {git="https://github.com/snakemake/snakemake.git"}
 
 [build-system]

snakemake_storage_plugin_gcs/__init__.py

@@ -192,11 +192,11 @@ def is_valid_query(cls, query: str) -> StorageQueryValidationResult:
                 valid=False,
                 reason=f"cannot be parsed as URL ({e})",
             )
-        if parsed.scheme != "gcs":
+        if parsed.scheme != "gs":
             return StorageQueryValidationResult(
                 query=query,
                 valid=False,
-                reason="must start with gcs (gcs://...)",
+                reason="must start with gs (gs://...)",
             )
         return StorageQueryValidationResult(
             query=query,
@@ -210,7 +210,7 @@ def example_queries(cls) -> List[ExampleQuery]:
         """
         return [
             ExampleQuery(
-                query="gcs://mybucket/myfile.txt",
+                query="gs://mybucket/myfile.txt",
                 type=QueryType.ANY,
                 description="A file in an google storage (GCS) bucket",
             )