fix: correctly fail when printing disk space (#33)

* fix action * du home dir
snakemake · Aug 7, 2023 · 041738e · 041738e
1 parent 3a68a3b
commit 041738e
Showing 1 changed file with 6 additions and 2 deletions.
diff --git a/entrypoint.sh b/entrypoint.sh
@@ -10,14 +10,18 @@ if [ "$5" = 'containerize' ] ; then
     snakemake --directory $1 --snakefile $2 --show-failed-logs $3 --containerize > Dockerfile
     # return disk space usage on failing
     if [[ "$?" -ne 0 && "$6" = true ]] ; then
-        du -h -d3 $1
+        du -h -d3 $1 && exit 1
     fi
 elif [ "$5" = 'run' ] ; then
     # run snakemake with given args
     snakemake --directory $1 --snakefile $2 --show-failed-logs $3
     # return disk space usage on failing
     if [[ "$?" -ne 0 && "$6" = true ]] ; then
-        du -h -d3 $1
+        df -h
+        echo "du home\n"
+        du -h -d3 /github/home
+        echo "du working directory\n"
+        du -h -d3 $1 && exit 1
     fi
 else
     echo "Task input not recognized." && exit 1