fix: adapt to interface changes

.github/workflows/ci.yml

@@ -13,6 +13,10 @@ jobs:
       - name: Check out the code
         uses: actions/checkout@v3
 
+      - uses: actions/setup-python@v4
+        with:
+          python-version: "3.11"
+
       - name: Install poetry
         run: pipx install poetry
 
@@ -21,7 +25,7 @@ jobs:
 
       - uses: actions/setup-python@v4
         with:
-          python-version: "3.9"
+          python-version: "3.11"
           cache: poetry
 
       - name: Install Dependencies using Poetry
@@ -36,6 +40,10 @@ jobs:
       - name: Check out the code
         uses: actions/checkout@v3
 
+      - uses: actions/setup-python@v4
+        with:
+          python-version: "3.11"
+
       - name: Install poetry
         run: pipx install poetry
 
@@ -44,7 +52,7 @@ jobs:
 
       - uses: actions/setup-python@v4
         with:
-          python-version: "3.9"
+          python-version: "3.11"
           cache: poetry
 
       - name: Install Dependencies using Poetry
@@ -58,6 +66,10 @@ jobs:
     steps:
       - uses: actions/checkout@v3
 
+      - uses: actions/setup-python@v4
+        with:
+          python-version: "3.11"
+
       - name: Install poetry
         run: pipx install poetry
 
@@ -66,12 +78,11 @@ jobs:
 
       - uses: actions/setup-python@v4
         with:
-          python-version: "3.9"
+          python-version: "3.11"
           cache: poetry
 
-      - name: Install dependencies
-        run: |
-          poetry install
+      - name: Install Dependencies using Poetry
+        run: poetry install
 
       - name: Run pytest
         run: poetry run coverage run -m pytest tests/tests.py

.github/workflows/release-please.yml

@@ -24,9 +24,9 @@ jobs:
     steps:
       - uses: actions/checkout@v3
 
-      - uses: actions/setup-python@v2
+      - uses: actions/setup-python@v4
         with:
-          python-version: "3.9"
+          python-version: "3.11"
 
       - name: Install poetry
         run: pipx install poetry
@@ -36,13 +36,11 @@ jobs:
 
       - uses: actions/setup-python@v4
         with:
-          python-version: "3.9"
+          python-version: "3.11"
           cache: poetry
 
       - name: Install Dependencies using Poetry
-        run: |
-          pip install connection-pool # because it is incompatible with poetry
-          poetry install
+        run: poetry install
 
       - name: Publish to PyPi
         env:

pyproject.toml

@@ -6,10 +6,9 @@ authors = ["Johannes Koester <[email protected]>"]
 readme = "README.md"
 
 [tool.poetry.dependencies]
-python = "^3.9"
+python = "^3.11"
 snakemake-interface-common = "^1.13.0"
-snakemake-interface-executor-plugins = "^7.0.0"
-
+snakemake-interface-executor-plugins = "^8.0.0"
 
 [tool.poetry.group.dev.dependencies]
 black = "^23.7.0"

snakemake_executor_plugin_cluster_sync/__init__.py

@@ -43,27 +43,17 @@ class ExecutorSettings(ExecutorSettingsBase):
     # filesystem (True) or not (False).
     # This is e.g. the case for cloud execution.
     implies_no_shared_fs=False,
+    job_deploy_sources=False,
+    pass_default_storage_provider_args=True,
+    pass_default_resources_args=True,
+    pass_envvar_declarations_to_cmd=True,
+    auto_deploy_default_storage_provider=False,
 )
 
 
 # Required:
 # Implementation of your executor
 class Executor(RemoteExecutor):
-    def __init__(
-        self,
-        workflow: WorkflowExecutorInterface,
-        logger: LoggerExecutorInterface,
-    ):
-        super().__init__(
-            workflow,
-            logger,
-            # whether arguments for setting the remote provider shall  be passed to jobs
-            pass_default_storage_provider_args=True,
-            # whether arguments for setting default resources shall be passed to jobs
-            pass_default_resources_args=True,
-            # whether environment variables shall be passed to jobs
-            pass_envvar_declarations_to_cmd=True,
-        )
 
     def run_job(self, job: JobExecutorInterface):
         # Implement here how to run a job.