Version 1.0.0

First stable release.

• Refactored to new snakemake workflows standards (updated workflow structure, test via Github Actions, ...)
• Improved logging and benchmarking
• Unified and clarified output file structure
• Fixed a bug in similarity computation
• Improved report structure and added more results and plots.
• Added sanity checks to report. These offer a quick way to validate that the right modifications were applied to read sequences during certain rules.
• Overhauled plots for locus sizes. Additionally these can now use parameters from the config file.
• Improved documentation

Version 0.1.1

• Fix a bug causing incomplete trimming.
• Cleanup config parameters.

Version 0.1.0

Initial release.