v5.11.0

5.11.0 (2025-01-20)

Features

• add option to allow mapping to pangenome (#274) (e86cc81)
• allow setting of custom alignment properties (#346) (2d2a05e)
• support for samples w/ and w/o primers (#344) (7c24fb8)
• Update datavzrd-spells version for boolean spell and add clin_sig spell (#342) (185b2fe)

Bug Fixes

• cache ref data (#348) (0cf0fa8)
• fix datavzrd template for likely pathogenic interpretation (#350) (760f3b3)
• fix filtering primerless reads by pinning rust-script (#339) (ff37174)
• fix short observation plot (#334) (0d8dba7)
• sort order of marked duplicates (#351) (194357b)
• update to varlociraptor 8.5.1 (7cbd077)
• update wrapper versions to fix yte template bug (#349) (d175726)

Performance Improvements

• group calling jobs per patient/sample-group such that they are submitted to the same cluster/cloud nodes in order to save I/O (#338) (aa583d3)