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Original file line number | Diff line number | Diff line change |
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@@ -56,42 +56,51 @@ jobs: | |
--configfile .test/config-simple/config.yaml --use-conda | ||
--show-failed-logs -j 10 --conda-cleanup-pkgs cache --dryrun | ||
report: false | ||
cleanup: false | ||
- name: local input | ||
args: > | ||
--configfile .test/config-simple/config.yaml --use-conda | ||
--show-failed-logs -j 10 --conda-cleanup-pkgs cache | ||
report: true | ||
cleanup: false | ||
- name: testcase generation | ||
args: > | ||
results/testcases/one/freebayes/IX:314200 --configfile .test/config-simple/config.yaml | ||
report: false | ||
cleanup: false | ||
- name: target regions | ||
args: > | ||
--configfile .test/config-target-regions/config.yaml | ||
report: true | ||
cleanup: false | ||
- name: target regions, multiple BEDs | ||
args: > | ||
--configfile .test/config-target-regions/config_multiple_beds.yaml | ||
report: true | ||
cleanup: false | ||
- name: no candidate filtering | ||
args: > | ||
--configfile .test/config-no-candidate-filtering/config.yaml | ||
report: true | ||
cleanup: false | ||
- name: primers | ||
args: > | ||
--configfile .test/config_primers/config.yaml | ||
report: true | ||
cleanup: false | ||
- name: sra download | ||
args: > | ||
--configfile .test/config-sra/config.yaml | ||
report: true | ||
name: ${{ matrix.name }} | ||
cleanup: false | ||
name: test ${{ matrix.name }} | ||
|
||
steps: | ||
- name: update apt | ||
run: sudo apt-get update | ||
|
||
- name: Free Disk Space (Ubuntu) | ||
if: ${{ matrix.cleanup }} | ||
uses: jlumbroso/[email protected] | ||
with: | ||
# this might remove tools that are actually needed, | ||
|