Skip to content

Commit

Permalink
dbg
Browse files Browse the repository at this point in the history
  • Loading branch information
johanneskoester committed Jan 21, 2025
1 parent 6f27345 commit a2cb740
Showing 1 changed file with 10 additions and 1 deletion.
11 changes: 10 additions & 1 deletion .github/workflows/main.yml
Original file line number Diff line number Diff line change
Expand Up @@ -56,42 +56,51 @@ jobs:
--configfile .test/config-simple/config.yaml --use-conda
--show-failed-logs -j 10 --conda-cleanup-pkgs cache --dryrun
report: false
cleanup: false
- name: local input
args: >
--configfile .test/config-simple/config.yaml --use-conda
--show-failed-logs -j 10 --conda-cleanup-pkgs cache
report: true
cleanup: false
- name: testcase generation
args: >
results/testcases/one/freebayes/IX:314200 --configfile .test/config-simple/config.yaml
report: false
cleanup: false
- name: target regions
args: >
--configfile .test/config-target-regions/config.yaml
report: true
cleanup: false
- name: target regions, multiple BEDs
args: >
--configfile .test/config-target-regions/config_multiple_beds.yaml
report: true
cleanup: false
- name: no candidate filtering
args: >
--configfile .test/config-no-candidate-filtering/config.yaml
report: true
cleanup: false
- name: primers
args: >
--configfile .test/config_primers/config.yaml
report: true
cleanup: false
- name: sra download
args: >
--configfile .test/config-sra/config.yaml
report: true
name: ${{ matrix.name }}
cleanup: false
name: test ${{ matrix.name }}

steps:
- name: update apt
run: sudo apt-get update

- name: Free Disk Space (Ubuntu)
if: ${{ matrix.cleanup }}
uses: jlumbroso/[email protected]
with:
# this might remove tools that are actually needed,
Expand Down

0 comments on commit a2cb740

Please sign in to comment.