Mixed model analysis of phenotypes and heterosis in a line x tester hybrids data, heritability estimation, variance component analysis and genomic best linear unbiased prediction (GBLUP).
Phenotypic data for hybrids is in "HDP_Heterosis_ByBlock.csv", contains hybrid values (Hyb_v), mid parent heterosi (MPH), etc.
GRM_phased_thinned.RData has the genomic relationship matrices (GRM) calculated from the marker data, G = inbred additive GRM, A = hybrid additive GRM, and D = hybrid dominance matrix.
Output folder has RData files that has details from model fit and variance components and BLUPs/GBLUPs. Main results are in the parent directory of this subdirectory.
Scripts used to run model fit, plotting, and qsub files for submission of jobs to the cluster.