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Original file line number | Diff line number | Diff line change |
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Bootstrap: docker | ||
From: ubuntu:20.04 | ||
%files | ||
R_install.R /opt/R_install.R | ||
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||
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||
%post | ||
export DEBIAN_FRONTEND=noninteractive | ||
apt-get -y update | ||
apt-get -y install git python3 ncbi-blast+-legacy ncbi-blast+ python3 mafft python3-pip imagemagick diamond-aligner last-align | ||
apt-get -y install r-base libcurl4-openssl-dev libxml2-dev libgtk2.0-dev libssl-dev build-essential gfortran libblas-dev liblapack-dev r-cran-future | ||
apt-get -y install r-cran-stringr r-cran-dt r-cran-scales r-cran-igraph r-cran-hwriter r-bioc-biostrings | ||
apt-get -y install r-cran-plotrix r-cran-png r-cran-dplyr r-cran-plyr r-cran-optparse r-cran-dbi r-cran-rsqlite | ||
dpkg --add-architecture i386 | ||
apt-get update | ||
apt-get -y install libc6:i386 libncurses5:i386 libstdc++6:i386 | ||
Rscript /opt/R_install.R | ||
pip3 install pyRserve | ||
cd opt | ||
git clone https://github.com/kavonrtep/repex_tarean.git | ||
cd repex_tarean && make | ||
ln -s /opt/repex_tarean/seqclust /usr/local/bin/seqclust | ||
%environment | ||
export LC_ALL=C | ||
export PATH=/usr/games:$PATH | ||
export TMPDIR="" | ||
%runscript | ||
seqclust $@ | ||
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||
%labels | ||
Author [email protected] | ||
Version v0.0.2 | ||
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||
%test | ||
cd /opt/repex_tarean/ | ||
/opt/repex_tarean/test_repex_pipeline.py SHORT_SUITE |
38 changes: 38 additions & 0 deletions
38
_recipes/repeatexplorer/repex_tarean/Singularity.0.3.7.5996768
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,38 @@ | ||
Bootstrap: docker | ||
From: ubuntu:20.04 | ||
%files | ||
R_install.R /opt/R_install.R | ||
|
||
|
||
%post | ||
export DEBIAN_FRONTEND=noninteractive | ||
apt-get -y update | ||
apt-get -y install git python3 ncbi-blast+-legacy ncbi-blast+ python3 mafft python3-pip imagemagick diamond-aligner last-align | ||
apt-get -y install r-base libcurl4-openssl-dev libxml2-dev libgtk2.0-dev libssl-dev build-essential gfortran libblas-dev liblapack-dev r-cran-future | ||
apt-get -y install r-cran-stringr r-cran-dt r-cran-scales r-cran-igraph r-cran-hwriter r-bioc-biostrings | ||
apt-get -y install r-cran-plotrix r-cran-png r-cran-dplyr r-cran-plyr r-cran-optparse r-cran-dbi r-cran-rsqlite | ||
dpkg --add-architecture i386 | ||
apt-get update | ||
apt-get -y install libc6:i386 libncurses5:i386 libstdc++6:i386 | ||
Rscript /opt/R_install.R | ||
pip3 install pyRserve | ||
cd opt | ||
git clone https://[email protected]/petrnovak/repex_tarean.git | ||
cd repex_tarean | ||
git reset --hard 5996768 | ||
make | ||
ln -s /opt/repex_tarean/seqclust /usr/local/bin/seqclust | ||
%environment | ||
export LC_ALL=C | ||
export PATH=/usr/games:$PATH | ||
export TMPDIR="" | ||
%runscript | ||
seqclust $@ | ||
|
||
%labels | ||
Author [email protected] | ||
Version v0.0.2 | ||
|
||
%test | ||
cd /opt/repex_tarean/ | ||
/opt/repex_tarean/test_repex_pipeline.py SHORT_SUITE |
38 changes: 38 additions & 0 deletions
38
_recipes/repeatexplorer/repex_tarean/Singularity.0.3.8.dbaa07f
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,38 @@ | ||
Bootstrap: docker | ||
From: ubuntu:20.04 | ||
%files | ||
R_install.R /opt/R_install.R | ||
|
||
|
||
%post | ||
export DEBIAN_FRONTEND=noninteractive | ||
apt-get -y update | ||
apt-get -y install git python3 ncbi-blast+-legacy ncbi-blast+ python3 mafft python3-pip imagemagick diamond-aligner last-align | ||
apt-get -y install r-base libcurl4-openssl-dev libxml2-dev libgtk2.0-dev libssl-dev build-essential gfortran libblas-dev liblapack-dev r-cran-future | ||
apt-get -y install r-cran-stringr r-cran-dt r-cran-scales r-cran-igraph r-cran-hwriter r-bioc-biostrings | ||
apt-get -y install r-cran-plotrix r-cran-png r-cran-dplyr r-cran-plyr r-cran-optparse r-cran-dbi r-cran-rsqlite | ||
dpkg --add-architecture i386 | ||
apt-get update | ||
apt-get -y install libc6:i386 libncurses5:i386 libstdc++6:i386 | ||
Rscript /opt/R_install.R | ||
pip3 install pyRserve | ||
cd opt | ||
git clone https://[email protected]/petrnovak/repex_tarean.git | ||
cd repex_tarean | ||
git reset --hard dbaa07f | ||
make | ||
ln -s /opt/repex_tarean/seqclust /usr/local/bin/seqclust | ||
%environment | ||
export LC_ALL=C | ||
export PATH=/usr/games:$PATH | ||
export TMPDIR="" | ||
%runscript | ||
seqclust $@ | ||
|
||
%labels | ||
Author [email protected] | ||
Version v0.0.2 | ||
|
||
%test | ||
cd /opt/repex_tarean/ | ||
/opt/repex_tarean/test_repex_pipeline.py SHORT_SUITE |
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