Add changes

_data/containers.yaml

@@ -1,5 +1,5 @@
 bases:
-- count: 1928
+- count: 1931
   name: ubuntu
 - count: 430
   name: nvidia/cuda
@@ -1974,7 +1974,7 @@ bases:
 - count: 1
   name: nitesh1989/biocparallel-example
 bootstraps:
-- count: 6273
+- count: 6276
   name: docker
 - count: 472
   name: shub
@@ -2909,7 +2909,7 @@ orgs:
   name: nitesh1989
 tags:
   latest: 683
-  other: 5825
+  other: 5828
 versions:
   /nrs/funke/singularity/linajea/pylp_base:
     v1.5.img: 1
@@ -5481,7 +5481,7 @@ versions:
     '18.10': 9
     '19.04': 33
     '19.10': 16
-    '20.04': 426
+    '20.04': 429
     '20.04  ': 1
     '20.10': 3
     '21.04': 3

_recipes/repeatexplorer/repex_tarean/Singularity

@@ -0,0 +1,36 @@
+Bootstrap: docker
+From: ubuntu:20.04
+%files
+    R_install.R  /opt/R_install.R
+
+
+%post
+    export DEBIAN_FRONTEND=noninteractive
+    apt-get -y update
+    apt-get -y install git python3 ncbi-blast+-legacy ncbi-blast+ python3 mafft python3-pip imagemagick diamond-aligner last-align
+    apt-get -y install r-base libcurl4-openssl-dev libxml2-dev libgtk2.0-dev libssl-dev build-essential gfortran libblas-dev liblapack-dev r-cran-future
+    apt-get -y install r-cran-stringr r-cran-dt r-cran-scales r-cran-igraph r-cran-hwriter r-bioc-biostrings 
+    apt-get -y install r-cran-plotrix r-cran-png r-cran-dplyr r-cran-plyr r-cran-optparse r-cran-dbi r-cran-rsqlite
+    dpkg --add-architecture i386
+    apt-get update
+    apt-get -y install libc6:i386 libncurses5:i386 libstdc++6:i386
+    Rscript /opt/R_install.R
+    pip3 install pyRserve
+    cd opt
+    git clone https://github.com/kavonrtep/repex_tarean.git
+    cd repex_tarean && make
+    ln -s /opt/repex_tarean/seqclust /usr/local/bin/seqclust
+%environment
+    export LC_ALL=C
+    export PATH=/usr/games:$PATH
+    export TMPDIR=""
+%runscript
+    seqclust $@
+
+%labels
+    Author [email protected]
+    Version v0.0.2
+
+%test
+    cd /opt/repex_tarean/
+    /opt/repex_tarean/test_repex_pipeline.py SHORT_SUITE

_recipes/repeatexplorer/repex_tarean/Singularity.0.3.7.5996768

@@ -0,0 +1,38 @@
+Bootstrap: docker
+From: ubuntu:20.04
+%files
+    R_install.R  /opt/R_install.R
+
+
+%post
+    export DEBIAN_FRONTEND=noninteractive
+    apt-get -y update
+    apt-get -y install git python3 ncbi-blast+-legacy ncbi-blast+ python3 mafft python3-pip imagemagick diamond-aligner last-align
+    apt-get -y install r-base libcurl4-openssl-dev libxml2-dev libgtk2.0-dev libssl-dev build-essential gfortran libblas-dev liblapack-dev r-cran-future
+    apt-get -y install r-cran-stringr r-cran-dt r-cran-scales r-cran-igraph r-cran-hwriter r-bioc-biostrings 
+    apt-get -y install r-cran-plotrix r-cran-png r-cran-dplyr r-cran-plyr r-cran-optparse r-cran-dbi r-cran-rsqlite
+    dpkg --add-architecture i386
+    apt-get update
+    apt-get -y install libc6:i386 libncurses5:i386 libstdc++6:i386
+    Rscript /opt/R_install.R
+    pip3 install pyRserve
+    cd opt
+    git clone https://[email protected]/petrnovak/repex_tarean.git
+    cd repex_tarean
+    git reset --hard 5996768
+    make
+    ln -s /opt/repex_tarean/seqclust /usr/local/bin/seqclust
+%environment
+    export LC_ALL=C
+    export PATH=/usr/games:$PATH
+    export TMPDIR=""
+%runscript
+    seqclust $@
+
+%labels
+    Author [email protected]
+    Version v0.0.2
+
+%test
+    cd /opt/repex_tarean/
+    /opt/repex_tarean/test_repex_pipeline.py SHORT_SUITE

_recipes/repeatexplorer/repex_tarean/Singularity.0.3.8.dbaa07f

@@ -0,0 +1,38 @@
+Bootstrap: docker
+From: ubuntu:20.04
+%files
+    R_install.R  /opt/R_install.R
+
+
+%post
+    export DEBIAN_FRONTEND=noninteractive
+    apt-get -y update
+    apt-get -y install git python3 ncbi-blast+-legacy ncbi-blast+ python3 mafft python3-pip imagemagick diamond-aligner last-align
+    apt-get -y install r-base libcurl4-openssl-dev libxml2-dev libgtk2.0-dev libssl-dev build-essential gfortran libblas-dev liblapack-dev r-cran-future
+    apt-get -y install r-cran-stringr r-cran-dt r-cran-scales r-cran-igraph r-cran-hwriter r-bioc-biostrings 
+    apt-get -y install r-cran-plotrix r-cran-png r-cran-dplyr r-cran-plyr r-cran-optparse r-cran-dbi r-cran-rsqlite
+    dpkg --add-architecture i386
+    apt-get update
+    apt-get -y install libc6:i386 libncurses5:i386 libstdc++6:i386
+    Rscript /opt/R_install.R
+    pip3 install pyRserve
+    cd opt
+    git clone https://[email protected]/petrnovak/repex_tarean.git
+    cd repex_tarean
+    git reset --hard dbaa07f
+    make
+    ln -s /opt/repex_tarean/seqclust /usr/local/bin/seqclust
+%environment
+    export LC_ALL=C
+    export PATH=/usr/games:$PATH
+    export TMPDIR=""
+%runscript
+    seqclust $@
+
+%labels
+    Author [email protected]
+    Version v0.0.2
+
+%test
+    cd /opt/repex_tarean/
+    /opt/repex_tarean/test_repex_pipeline.py SHORT_SUITE