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diff --git a/_data/containers.yaml b/_data/containers.yaml
diff --git a/_data/repos.yml b/_data/repos.yml
diff --git a/_recipes/NatoNathan/setapDocker/Singularity.def b/_recipes/NatoNathan/setapDocker/Singularity.def
@@ -0,0 +1,86 @@
+Bootstrap: library
+From: nitishnarula/secure/ubuntu-focal:20210121
+
+%post
+ export DEBIAN_FRONTEND=noninteractive
+# Updates
+ apt-get update
+ apt-get -y upgrade
+# Core tools
+# Beware tzdata prompts for input
+ apt-get install -y tzdata
+ apt-get install -y apt-utils
+ apt-get install -y software-properties-common rsync
+
+
+# ===== Tools======
+ apt-get install -y gnupg2
+ apt-get install -y tree
+ apt-get install -y nano
+ apt-get install -y git
+ apt-get install -y wget
+ apt-get install -y curl
+ apt-get install -y pdftk
+
+# ====== GH CLI ======
+ apt-key adv --keyserver keyserver.ubuntu.com --recv-key C99B11DEB97541F0
+ apt-add-repository https://cli.github.com/packages
+ apt-get update
+ apt-get install -y gh
+
+#==========github==============
+ curl -s https://packagecloud.io/install/repositories/github/git-lfs/script.deb.sh | bash
+ apt-get install -y git-lfs
+ git lfs install
+
+# ====== Markdown lint ======
+ apt-get install -y ruby
+ gem install mdl
+
+# ====== Python ======
+ apt-get install -y python3
+ apt-get install -y python3-pip
+ pip3 install -U pytest
+ apt-get install -y pep8
+
+# == Java===
+ apt-get install -y openjdk-14-jdk-headless
+
+#======NPM=====
+ apt-get install -y npm
+# npm i --save-dev eslint eslint-config-portsoc
+ npm i eslint eslint-config-portsoc
+ npm install log4js
+
+# ===== Pandoc Stuff ======
+ apt-get install -y texlive-xetex
+ apt-get install -y pandoc
+ wget https://github.com/jgm/pandoc/releases/download/2.11.3.2/pandoc-2.11.3.2-1-amd64.deb
+ dpkg -i pandoc-2.11.3.2-1-amd64.deb
+# For svg files
+ apt-get install -y librsvg2-bin
+
+#=========GO - Singularity=========
+ wget https://dl.google.com/go/go1.15.11.linux-amd64.tar.gz
+ tar -C /usr/local -xzvf go1.15.11.linux-amd64.tar.gz
+ rm go1.15.11.linux-amd64.tar.gz
+ echo 'export GOPATH=${HOME}/go' >> ~/.bashrc
+export GOPATH=${HOME}/go
+ echo 'export PATH=/usr/local/go/bin:${PATH}:${GOPATH}/bin' >> ~/.bashrc
+export PATH=/usr/local/go/bin:${PATH}:${GOPATH}/bin
+ go version
+
+#========== Singularity===========
+cd /root
+ wget https://github.com/hpcng/singularity/releases/download/v3.7.3/singularity-3.7.3.tar.gz
+ tar -xzf singularity-3.7.3.tar.gz
+ rm -f singularity-3.7.3.tar.gz
+ cd singularity && \
+./mconfig && \
+make -C ./builddir  && \
+make -C ./builddir install
+ rm -rf singularity/
+ singularity --version
+
+# Clean up a bit
+ apt-get clean
diff --git a/_recipes/cokelaer/damona/damona/software/helloworld/Singularity.helloworld_1.0.0 b/_recipes/cokelaer/damona/damona/software/helloworld/Singularity.helloworld_1.0.0
@@ -0,0 +1,13 @@
+BootStrap: docker
+From: alpine:3.8
+
+%post
+
+    apk update && apk add bash
+
+%environment
+    export PATH=/usr/local/bin:$PATH
+
+%runscript
+    echo "Hello Lenny"
+
diff --git a/_recipes/cokelaer/damona/damona/software/multiqc/Singularity.multiqc_1.16.0 b/_recipes/cokelaer/damona/damona/software/multiqc/Singularity.multiqc_1.16.0
@@ -0,0 +1,33 @@
+BootStrap: docker
+From: python:3.11-slim
+
+%labels
+
+    AUTHOR Thomas Cokelaer
+
+%files
+
+    sequana_0.16.0/
+
+%post
+
+    apt-get update 
+
+    # force the version in case there is a pin on sequana
+    pip install  multiqc==1.16
+
+    # this contains the multiqc modules only
+    cp -r sequana_0.16.0 /opt
+    cd /opt/sequana_0.16.0/sequana_0.16.0
+    pip install .
+
+    pip install colorlog
+
+    apt-get autoremove -y && apt-get clean
+
+
+%environment
+    export LANG=C.UTF-8
+    export LC_ALL=C.UTF-8
+
+
diff --git a/_recipes/cokelaer/damona/damona/software/sequana/Singularity.sequana_0.16.1 b/_recipes/cokelaer/damona/damona/software/sequana/Singularity.sequana_0.16.1
@@ -0,0 +1,40 @@
+BootStrap: docker
+From: python:3.11-slim
+
+%labels
+
+    AUTHOR Thomas Cokelaer
+
+%post
+    SAMTOOLS_VERSION=1.16
+
+    apt-get update
+    apt-get install -y wget make curl bzip2 build-essential
+    apt-get install -y libhts-dev
+    apt-get install -y graphviz
+
+    # to compile samtools
+    apt install -y libncurses5-dev libbz2-dev
+    # install samtools
+    curl -sSL https://github.com/samtools/samtools/releases/download/$SAMTOOLS_VERSION/samtools-$SAMTOOLS_VERSION.tar.bz2 | tar -xjf - \
+         && cd samtools-$SAMTOOLS_VERSION \
+         && ./configure && make && make install && cd -
+
+    # install htslib
+    cd samtools-${SAMTOOLS_VERSION}/htslib-${SAMTOOLS_VERSION} && make && make install && cd -
+
+    rm -rf /samtools-$SAMTOOLS_VERSION
+
+    # Sequana source code
+    pip install cython
+    pip install sequana==0.16.1
+
+    apt-get remove -y wget \
+    && apt-get autoremove -y \
+    && apt-get clean
+
+%environment
+    export LANG=C.UTF-8
+    export LC_ALL=C.UTF-8
+
+
diff --git a/_recipes/cschu/container-forge/Singularity.bbmap b/_recipes/cschu/container-forge/Singularity.bbmap
@@ -0,0 +1,33 @@
+Bootstrap: docker
+From: ubuntu:20.04
+IncludeCmd: yes
+
+%labels
+  MAINTAINER cschu ([email protected])
+  VERSION v.0.12
+
+%environment
+export LC_ALL=C
+export PATH=$PATH:/opt/software/bbmap/
+
+%post
+  apt-get update
+
+  apt-get install -y 
+  apt-get install -y apt-transport-https apt-utils software-properties-common
+
+  apt-get install -y add-apt-key
+  export DEBIAN_FRONTEND=noninteractive
+  ln -fs /usr/share/zoneinfo/America/New_York /etc/localtime
+  apt-get install -y tzdata
+  dpkg-reconfigure --frontend noninteractive tzdata
+
+  apt-get install -y wget python3-pip git dirmngr gnupg ca-certificates build-essential libssl-dev libcurl4-gnutls-dev openjdk-11-jre
+
+
+  mkdir -p /opt/software/ && \
+  cd /opt/software && \
+  wget -O bbmap.tar.gz https://sourceforge.net/projects/bbmap/files/BBMap_39.03.tar.gz/download && \
+  tar xvzf bbmap.tar.gz && \
+  rm bbmap.tar.gz
+
diff --git a/_recipes/cschu/container-forge/Singularity.carveme b/_recipes/cschu/container-forge/Singularity.carveme
@@ -0,0 +1,47 @@
+Bootstrap: docker
+From: ubuntu:20.04
+IncludeCmd: yes
+
+%labels
+  MAINTAINER cschu ([email protected])
+  VERSION v.0.12
+
+%environment
+export LC_ALL=C
+# export PATH=$PATH:/opt/software/prokka/bin:/opt/software/prokka/binaries/linux:/opt/software/miniconda3/bin
+# export PATH=$PATH:/opt/software/prokka/bin:/opt/software/miniconda3/bin
+export PATH=/opt/software/miniconda3/bin:$PATH
+
+%post
+  apt-get update
+
+  apt-get install -y 
+  apt-get install -y apt-transport-https apt-utils software-properties-common
+
+  apt-get install -y add-apt-key
+  export DEBIAN_FRONTEND=noninteractive
+  ln -fs /usr/share/zoneinfo/America/New_York /etc/localtime
+  apt-get install -y tzdata
+  dpkg-reconfigure --frontend noninteractive tzdata
+
+  apt-get install -y build-essential wget python3-pip git 
+
+
+
+
+  wget -q https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh && \
+  bash Miniconda3-latest-Linux-x86_64.sh -b -p /opt/software/miniconda3 && \
+  rm -f Miniconda3-latest-Linux-x86_64.sh && \
+  /opt/software/miniconda3/bin/conda install -y -c conda-forge -c bioconda diamond pyscipopt
+
+  # ls /opt/software/miniconda3/bin/
+  /opt/software/miniconda3/bin/pip install carveme
+
+  ln -s libscip.so.8.1.0.0 /opt/software/miniconda3/lib/libscip.so.8.0
+
+
+  # echo ">protein1\nWHYYYYYYYYY" > dummy.faa
+  # carve --solver scip dummy.faa
+  export PATH=/opt/software/miniconda3/bin:$PATH
+  diamond makedb --in /opt/software/miniconda3/lib/python3.11/site-packages/carveme/data/generated/bigg_proteins.faa -d /opt/software/miniconda3/lib/python3.11/site-packages/carveme/data/generated/bigg_proteins
+
diff --git a/_recipes/cschu/container-forge/Singularity.fish_probes.v0.1 b/_recipes/cschu/container-forge/Singularity.fish_probes.v0.1
@@ -0,0 +1,31 @@
+Bootstrap: docker
+From: ubuntu:20.04
+IncludeCmd: yes
+
+%labels
+  MAINTAINER cschu ([email protected])
+  VERSION v.0.1
+
+%environment
+export LC_ALL=C
+
+%post
+  apt-get update
+
+  apt-get install -y 
+  apt-get install -y apt-transport-https apt-utils software-properties-common
+
+  apt-get install -y add-apt-key
+  export DEBIAN_FRONTEND=noninteractive
+  ln -fs /usr/share/zoneinfo/America/New_York /etc/localtime
+  apt-get install -y tzdata
+  dpkg-reconfigure --frontend noninteractive tzdata
+
+  apt-get install -y wget python3-pip git dirmngr gnupg ca-certificates build-essential libssl-dev libcurl4-gnutls-dev libxml2-dev libfontconfig1-dev libharfbuzz-dev libfribidi-dev libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev
+
+  pip3 install biopython
+
+  mkdir -p /opt/software
+  git clone https://github.com/AlessioMilanese/FISH_probes.git
+  cd FISH_probes
+  pip3 install . 
diff --git a/_recipes/cschu/container-forge/Singularity.gffread b/_recipes/cschu/container-forge/Singularity.gffread
@@ -0,0 +1,49 @@
+Bootstrap: docker
+From: ubuntu:20.04
+IncludeCmd: yes
+
+%labels
+  MAINTAINER cschu ([email protected])
+  VERSION v.0.1
+
+%environment
+export LC_ALL=C
+export PATH=$PATH:/opt/software/miniconda3/bin:/opt/software/fetchMGs:/opt/software/fetchMGs/bin
+
+%post
+  apt-get update
+
+  apt-get install -y 
+  apt-get install -y apt-transport-https apt-utils software-properties-common
+
+  apt-get install -y add-apt-key
+  export DEBIAN_FRONTEND=noninteractive
+  ln -fs /usr/share/zoneinfo/America/New_York /etc/localtime
+  apt-get install -y tzdata
+  dpkg-reconfigure --frontend noninteractive tzdata
+
+  apt-get install -y wget python3-pip git dirmngr gnupg ca-certificates build-essential libssl-dev libcurl4-gnutls-dev libxml2-dev libfontconfig1-dev libharfbuzz-dev libfribidi-dev libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev
+
+  mkdir -p /opt/software && cd /opt/software
+
+  wget -q https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh 
+  bash Miniconda3-latest-Linux-x86_64.sh -b -p /opt/software/miniconda3
+  rm -f Miniconda3-latest-Linux-x86_64.sh
+  /opt/software/miniconda3/bin/conda install -y -c conda-forge -c bioconda gffread>=0.11.6
+
+  # # install what you can via conda
+  # # /opt/software/miniconda3/bin/conda install -y -c conda-forge -c bioconda hmmer 'samtools>=1.13' bwa kraken2 'gatk4==4.1.6.0-0' fastqc multiqc bbmap seqtk
+	#   'hmmer=3.3.2=h1b792b2_1' \
+  #   'samtools=1.13=h8c37831_0' \
+  #   'bwa=0.7.17=h5bf99c6_8' \
+  #   'kraken2=2.1.2=pl5262h7d875b9_0' \
+  #   'gatk4=4.1.6.0=py38_0' \
+  #   'fastqc=0.11.9=hdfd78af_1' \
+  #   'multiqc=1.11=pyhdfd78af_0' \
+  #   'bbmap=38.91=he522d1c_1' \
+  #   'seqtk=1.3=h5bf99c6_3'
+
+
+
+
+
diff --git a/_recipes/cschu/container-forge/Singularity.humann3 b/_recipes/cschu/container-forge/Singularity.humann3
@@ -0,0 +1,53 @@
+Bootstrap: docker
+From: ubuntu:20.04
+IncludeCmd: yes
+
+%labels
+  MAINTAINER cschu ([email protected])
+  VERSION v.0.1
+
+%environment
+export LC_ALL=C
+export PATH=$PATH:/opt/software/miniconda3/bin:/opt/software/fetchMGs:/opt/software/fetchMGs/bin
+
+%post
+  apt-get update
+
+  apt-get install -y 
+  apt-get install -y apt-transport-https apt-utils software-properties-common
+
+  apt-get install -y add-apt-key
+  export DEBIAN_FRONTEND=noninteractive
+  ln -fs /usr/share/zoneinfo/America/New_York /etc/localtime
+  apt-get install -y tzdata
+  dpkg-reconfigure --frontend noninteractive tzdata
+
+  apt-get install -y wget python3-pip git dirmngr gnupg ca-certificates build-essential libssl-dev libcurl4-gnutls-dev libxml2-dev libfontconfig1-dev libharfbuzz-dev libfribidi-dev libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev
+
+  mkdir -p /opt/software && cd /opt/software
+
+  wget -q https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh 
+  bash Miniconda3-latest-Linux-x86_64.sh -b -p /opt/software/miniconda3
+  rm -f Miniconda3-latest-Linux-x86_64.sh
+  /opt/software/miniconda3/bin/conda install -y -c conda-forge -c bioconda bowtie2 diamond metaphlan
+
+  git clone https://github.com/biobakery/humann.git && cd humann && sed -i "363 s/3/4/" humann/config.py && sed -i "205 s/\$/.strip()/" humann/search/prescreen.py && sed -i '153i\                print(version_found)' humann/search/prescreen.py && sed -i "100 s/message/line/" humann/search/prescreen.py && /opt/software/miniconda3/bin/python setup.py install
+
+  # pip install humann
+
+  # # install what you can via conda
+  # # /opt/software/miniconda3/bin/conda install -y -c conda-forge -c bioconda hmmer 'samtools>=1.13' bwa kraken2 'gatk4==4.1.6.0-0' fastqc multiqc bbmap seqtk
+	#   'hmmer=3.3.2=h1b792b2_1' \
+  #   'samtools=1.13=h8c37831_0' \
+  #   'bwa=0.7.17=h5bf99c6_8' \
+  #   'kraken2=2.1.2=pl5262h7d875b9_0' \
+  #   'gatk4=4.1.6.0=py38_0' \
+  #   'fastqc=0.11.9=hdfd78af_1' \
+  #   'multiqc=1.11=pyhdfd78af_0' \
+  #   'bbmap=38.91=he522d1c_1' \
+  #   'seqtk=1.3=h5bf99c6_3'
+
+
+
+
+