[bot] update/containers-2023-09-21

quay.io/biocontainers/dbcanlight/container.yaml

@@ -0,0 +1,19 @@
+url: https://biocontainers.pro/tools/dbcanlight
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for dbcanlight
+latest:
+  1.0.0--pyh7cba7a3_0: sha256:8cc910f8687f27de48da644fefeaa80c0be5355a1885c47ca8a90ac6fc40aa18
+tags:
+  1.0.0--pyh7cba7a3_0: sha256:8cc910f8687f27de48da644fefeaa80c0be5355a1885c47ca8a90ac6fc40aa18
+docker: quay.io/biocontainers/dbcanlight
+aliases:
+  dbcanLight: /usr/local/bin/dbcanLight
+  dbcanLight-hmmparser: /usr/local/bin/dbcanLight-hmmparser
+  dbcanLight-subparser: /usr/local/bin/dbcanLight-subparser
+  f2py3.10: /usr/local/bin/f2py3.10
+  2to3-3.10: /usr/local/bin/2to3-3.10
+  idle3.10: /usr/local/bin/idle3.10
+  pydoc3.10: /usr/local/bin/pydoc3.10
+  python3.10: /usr/local/bin/python3.10
+  python3.10-config: /usr/local/bin/python3.10-config
+  python3.1: /usr/local/bin/python3.1

quay.io/biocontainers/haplink/container.yaml

@@ -0,0 +1,98 @@
+url: https://biocontainers.pro/tools/haplink
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for haplink
+latest:
+  1.0.0--h031d066_0: sha256:24be64f759b16a0417604d173ab828ac7d555ac4fdf95788676ee8ebe4525300
+tags:
+  1.0.0--h031d066_0: sha256:24be64f759b16a0417604d173ab828ac7d555ac4fdf95788676ee8ebe4525300
+docker: quay.io/biocontainers/haplink
+aliases:
+  7z: /usr/local/bin/7z
+  7za: /usr/local/bin/7za
+  7zr: /usr/local/bin/7zr
+  git2: /usr/local/bin/git2
+  haplink: /usr/local/bin/haplink
+  julia: /usr/local/bin/julia
+  mbedtls_aead_demo: /usr/local/bin/mbedtls_aead_demo
+  mbedtls_benchmark: /usr/local/bin/mbedtls_benchmark
+  mbedtls_cert_app: /usr/local/bin/mbedtls_cert_app
+  mbedtls_cert_req: /usr/local/bin/mbedtls_cert_req
+  mbedtls_cert_write: /usr/local/bin/mbedtls_cert_write
+  mbedtls_cipher_aead_demo: /usr/local/bin/mbedtls_cipher_aead_demo
+  mbedtls_crl_app: /usr/local/bin/mbedtls_crl_app
+  mbedtls_crypt_and_hash: /usr/local/bin/mbedtls_crypt_and_hash
+  mbedtls_crypto_examples: /usr/local/bin/mbedtls_crypto_examples
+  mbedtls_dh_client: /usr/local/bin/mbedtls_dh_client
+  mbedtls_dh_genprime: /usr/local/bin/mbedtls_dh_genprime
+  mbedtls_dh_server: /usr/local/bin/mbedtls_dh_server
+  mbedtls_dtls_client: /usr/local/bin/mbedtls_dtls_client
+  mbedtls_dtls_server: /usr/local/bin/mbedtls_dtls_server
+  mbedtls_ecdh_curve25519: /usr/local/bin/mbedtls_ecdh_curve25519
+  mbedtls_ecdsa: /usr/local/bin/mbedtls_ecdsa
+  mbedtls_gen_entropy: /usr/local/bin/mbedtls_gen_entropy
+  mbedtls_gen_key: /usr/local/bin/mbedtls_gen_key
+  mbedtls_gen_random_ctr_drbg: /usr/local/bin/mbedtls_gen_random_ctr_drbg
+  mbedtls_generic_sum: /usr/local/bin/mbedtls_generic_sum
+  mbedtls_hello: /usr/local/bin/mbedtls_hello
+  mbedtls_hmac_demo: /usr/local/bin/mbedtls_hmac_demo
+  mbedtls_key_app: /usr/local/bin/mbedtls_key_app
+  mbedtls_key_app_writer: /usr/local/bin/mbedtls_key_app_writer
+  mbedtls_key_ladder_demo: /usr/local/bin/mbedtls_key_ladder_demo
+  mbedtls_key_ladder_demo.sh: /usr/local/bin/mbedtls_key_ladder_demo.sh
+  mbedtls_load_roots: /usr/local/bin/mbedtls_load_roots
+  mbedtls_md_hmac_demo: /usr/local/bin/mbedtls_md_hmac_demo
+  mbedtls_mini_client: /usr/local/bin/mbedtls_mini_client
+  mbedtls_mpi_demo: /usr/local/bin/mbedtls_mpi_demo
+  mbedtls_pem2der: /usr/local/bin/mbedtls_pem2der
+  mbedtls_pk_decrypt: /usr/local/bin/mbedtls_pk_decrypt
+  mbedtls_pk_encrypt: /usr/local/bin/mbedtls_pk_encrypt
+  mbedtls_pk_sign: /usr/local/bin/mbedtls_pk_sign
+  mbedtls_pk_verify: /usr/local/bin/mbedtls_pk_verify
+  mbedtls_psa_constant_names: /usr/local/bin/mbedtls_psa_constant_names
+  mbedtls_query_compile_time_config: /usr/local/bin/mbedtls_query_compile_time_config
+  mbedtls_req_app: /usr/local/bin/mbedtls_req_app
+  mbedtls_rsa_decrypt: /usr/local/bin/mbedtls_rsa_decrypt
+  mbedtls_rsa_encrypt: /usr/local/bin/mbedtls_rsa_encrypt
+  mbedtls_rsa_genkey: /usr/local/bin/mbedtls_rsa_genkey
+  mbedtls_rsa_sign: /usr/local/bin/mbedtls_rsa_sign
+  mbedtls_rsa_sign_pss: /usr/local/bin/mbedtls_rsa_sign_pss
+  mbedtls_rsa_verify: /usr/local/bin/mbedtls_rsa_verify
+  mbedtls_rsa_verify_pss: /usr/local/bin/mbedtls_rsa_verify_pss
+  mbedtls_selftest: /usr/local/bin/mbedtls_selftest
+  mbedtls_ssl_client1: /usr/local/bin/mbedtls_ssl_client1
+  mbedtls_ssl_client2: /usr/local/bin/mbedtls_ssl_client2
+  mbedtls_ssl_context_info: /usr/local/bin/mbedtls_ssl_context_info
+  mbedtls_ssl_fork_server: /usr/local/bin/mbedtls_ssl_fork_server
+  mbedtls_ssl_mail_client: /usr/local/bin/mbedtls_ssl_mail_client
+  mbedtls_ssl_pthread_server: /usr/local/bin/mbedtls_ssl_pthread_server
+  mbedtls_ssl_server: /usr/local/bin/mbedtls_ssl_server
+  mbedtls_ssl_server2: /usr/local/bin/mbedtls_ssl_server2
+  mbedtls_strerror: /usr/local/bin/mbedtls_strerror
+  mbedtls_udp_proxy: /usr/local/bin/mbedtls_udp_proxy
+  mbedtls_zeroize: /usr/local/bin/mbedtls_zeroize
+  scalar: /usr/local/bin/scalar
+  git: /usr/local/bin/git
+  git-cvsserver: /usr/local/bin/git-cvsserver
+  git-receive-pack: /usr/local/bin/git-receive-pack
+  git-shell: /usr/local/bin/git-shell
+  git-upload-archive: /usr/local/bin/git-upload-archive
+  git-upload-pack: /usr/local/bin/git-upload-pack
+  gitk: /usr/local/bin/gitk
+  hwloc-gather-cpuid: /usr/local/bin/hwloc-gather-cpuid
+  hwloc-annotate: /usr/local/bin/hwloc-annotate
+  hwloc-bind: /usr/local/bin/hwloc-bind
+  hwloc-calc: /usr/local/bin/hwloc-calc
+  hwloc-compress-dir: /usr/local/bin/hwloc-compress-dir
+  hwloc-diff: /usr/local/bin/hwloc-diff
+  hwloc-distrib: /usr/local/bin/hwloc-distrib
+  hwloc-gather-topology: /usr/local/bin/hwloc-gather-topology
+  hwloc-info: /usr/local/bin/hwloc-info
+  hwloc-ls: /usr/local/bin/hwloc-ls
+  hwloc-patch: /usr/local/bin/hwloc-patch
+  hwloc-ps: /usr/local/bin/hwloc-ps
+  lstopo: /usr/local/bin/lstopo
+  lstopo-no-graphics: /usr/local/bin/lstopo-no-graphics
+  cmpfillin: /usr/local/bin/cmpfillin
+  gpmetis: /usr/local/bin/gpmetis
+  graphchk: /usr/local/bin/graphchk
+  m2gmetis: /usr/local/bin/m2gmetis

quay.io/biocontainers/hifieval/container.yaml

@@ -0,0 +1,16 @@
+url: https://biocontainers.pro/tools/hifieval
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for hifieval
+latest:
+  0.4.0--pyh7cba7a3_0: sha256:e7b8d120ffb31cf51cc71a3f240e77e4519e682684c24d1f469e4224cae459fa
+tags:
+  0.4.0--pyh7cba7a3_0: sha256:e7b8d120ffb31cf51cc71a3f240e77e4519e682684c24d1f469e4224cae459fa
+docker: quay.io/biocontainers/hifieval
+aliases:
+  hifieval.py: /usr/local/bin/hifieval.py
+  2to3-3.11: /usr/local/bin/2to3-3.11
+  idle3.11: /usr/local/bin/idle3.11
+  pydoc3.11: /usr/local/bin/pydoc3.11
+  python3.11: /usr/local/bin/python3.11
+  python3.11-config: /usr/local/bin/python3.11-config
+  python3.1: /usr/local/bin/python3.1

quay.io/biocontainers/marker-magu/container.yaml

@@ -0,0 +1,44 @@
+url: https://biocontainers.pro/tools/marker-magu
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for marker-magu
+latest:
+  0.4.0--pyhdfd78af_0: sha256:6fe592fa89def299c3c0cfc83f68f73ae4a240cdb61f536737aa873797359086
+tags:
+  0.4.0--pyhdfd78af_0: sha256:6fe592fa89def299c3c0cfc83f68f73ae4a240cdb61f536737aa873797359086
+docker: quay.io/biocontainers/marker-magu
+aliases:
+  bwa-mem2: /usr/local/bin/bwa-mem2
+  bwa-mem2.avx: /usr/local/bin/bwa-mem2.avx
+  bwa-mem2.avx2: /usr/local/bin/bwa-mem2.avx2
+  bwa-mem2.avx512bw: /usr/local/bin/bwa-mem2.avx512bw
+  bwa-mem2.sse41: /usr/local/bin/bwa-mem2.sse41
+  bwa-mem2.sse42: /usr/local/bin/bwa-mem2.sse42
+  coverm: /usr/local/bin/coverm
+  dashing: /usr/local/bin/dashing
+  markermagu: /usr/local/bin/markermagu
+  remove_minimap2_duplicated_headers: /usr/local/bin/remove_minimap2_duplicated_headers
+  starcode: /usr/local/bin/starcode
+  fastANI: /usr/local/bin/fastANI
+  seqkit: /usr/local/bin/seqkit
+  fastp: /usr/local/bin/fastp
+  igzip: /usr/local/bin/igzip
+  basenc: /usr/local/bin/basenc
+  b2sum: /usr/local/bin/b2sum
+  ls: /usr/local/bin/ls
+  base32: /usr/local/bin/base32
+  base64: /usr/local/bin/base64
+  basename: /usr/local/bin/basename
+  cat: /usr/local/bin/cat
+  chcon: /usr/local/bin/chcon
+  chgrp: /usr/local/bin/chgrp
+  chmod: /usr/local/bin/chmod
+  chown: /usr/local/bin/chown
+  chroot: /usr/local/bin/chroot
+  cksum: /usr/local/bin/cksum
+  comm: /usr/local/bin/comm
+  cp: /usr/local/bin/cp
+  csplit: /usr/local/bin/csplit
+  cut: /usr/local/bin/cut
+  date: /usr/local/bin/date
+  dd: /usr/local/bin/dd
+  df: /usr/local/bin/df

quay.io/biocontainers/pixelator/container.yaml

@@ -0,0 +1,72 @@
+url: https://biocontainers.pro/tools/pixelator
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for pixelator
+latest:
+  0.13.1--pyh7cba7a3_0: sha256:e8d8f66592293d1c4d3ca771cc038f0370bc572dfb3292880d294ede10b573ab
+tags:
+  0.13.1--pyh7cba7a3_0: sha256:e8d8f66592293d1c4d3ca771cc038f0370bc572dfb3292880d294ede10b573ab
+docker: quay.io/biocontainers/pixelator
+aliases:
+  cmtime: /usr/local/bin/cmtime
+  elastipubsub5: /usr/local/bin/elastipubsub5
+  h5fuse.sh: /usr/local/bin/h5fuse.sh
+  ib_acme: /usr/local/bin/ib_acme
+  ibv_asyncwatch: /usr/local/bin/ibv_asyncwatch
+  ibv_devices: /usr/local/bin/ibv_devices
+  ibv_devinfo: /usr/local/bin/ibv_devinfo
+  ibv_rc_pingpong: /usr/local/bin/ibv_rc_pingpong
+  ibv_srq_pingpong: /usr/local/bin/ibv_srq_pingpong
+  ibv_uc_pingpong: /usr/local/bin/ibv_uc_pingpong
+  ibv_ud_pingpong: /usr/local/bin/ibv_ud_pingpong
+  ibv_xsrq_pingpong: /usr/local/bin/ibv_xsrq_pingpong
+  io_demo: /usr/local/bin/io_demo
+  mckey: /usr/local/bin/mckey
+  mqtt5_app: /usr/local/bin/mqtt5_app
+  mqtt5_canary: /usr/local/bin/mqtt5_canary
+  mqtt5canary: /usr/local/bin/mqtt5canary
+  pixelator: /usr/local/bin/pixelator
+  protoc-23.4.0: /usr/local/bin/protoc-23.4.0
+  pysemver: /usr/local/bin/pysemver
+  rcopy: /usr/local/bin/rcopy
+  rdma_client: /usr/local/bin/rdma_client
+  rdma_server: /usr/local/bin/rdma_server
+  rdma_xclient: /usr/local/bin/rdma_xclient
+  rdma_xserver: /usr/local/bin/rdma_xserver
+  riostream: /usr/local/bin/riostream
+  rping: /usr/local/bin/rping
+  rstream: /usr/local/bin/rstream
+  ucmatose: /usr/local/bin/ucmatose
+  ucx_info: /usr/local/bin/ucx_info
+  ucx_perftest: /usr/local/bin/ucx_perftest
+  ucx_read_profile: /usr/local/bin/ucx_read_profile
+  udaddy: /usr/local/bin/udaddy
+  udpong: /usr/local/bin/udpong
+  umi_tools: /usr/local/bin/umi_tools
+  yapf: /usr/local/bin/yapf
+  yapf-diff: /usr/local/bin/yapf-diff
+  yappi: /usr/local/bin/yappi
+  produce_x_platform_fuzz_corpus: /usr/local/bin/produce_x_platform_fuzz_corpus
+  run_x_platform_fuzz_corpus: /usr/local/bin/run_x_platform_fuzz_corpus
+  pyfastx: /usr/local/bin/pyfastx
+  elasticurl: /usr/local/bin/elasticurl
+  elasticurl_cpp: /usr/local/bin/elasticurl_cpp
+  elastipubsub: /usr/local/bin/elastipubsub
+  csv-import: /usr/local/bin/csv-import
+  orc-memory: /usr/local/bin/orc-memory
+  orc-scan: /usr/local/bin/orc-scan
+  timezone-dump: /usr/local/bin/timezone-dump
+  fastp: /usr/local/bin/fastp
+  h5delete: /usr/local/bin/h5delete
+  orc-contents: /usr/local/bin/orc-contents
+  orc-metadata: /usr/local/bin/orc-metadata
+  orc-statistics: /usr/local/bin/orc-statistics
+  sha256_profile: /usr/local/bin/sha256_profile
+  igraph: /usr/local/bin/igraph
+  scanpy: /usr/local/bin/scanpy
+  cutadapt: /usr/local/bin/cutadapt
+  gflags_completions.sh: /usr/local/bin/gflags_completions.sh
+  hwloc-gather-cpuid: /usr/local/bin/hwloc-gather-cpuid
+  hwloc-annotate: /usr/local/bin/hwloc-annotate
+  hwloc-bind: /usr/local/bin/hwloc-bind
+  hwloc-calc: /usr/local/bin/hwloc-calc
+  hwloc-compress-dir: /usr/local/bin/hwloc-compress-dir

quay.io/biocontainers/solote/container.yaml

@@ -0,0 +1,37 @@
+url: https://biocontainers.pro/tools/solote
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for solote
+latest:
+  1.09--hdfd78af_0: sha256:383fe3287fb7b3681c3c1d5959197cebe435801dce42c844ecacb9da58c043ce
+tags:
+  1.09--hdfd78af_0: sha256:383fe3287fb7b3681c3c1d5959197cebe435801dce42c844ecacb9da58c043ce
+docker: quay.io/biocontainers/solote
+aliases:
+  SoloTE_RepeatMasker_to_BED.py: /usr/local/bin/SoloTE_RepeatMasker_to_BED.py
+  SoloTE_pipeline.py: /usr/local/bin/SoloTE_pipeline.py
+  annotateBAM.py: /usr/local/bin/annotateBAM.py
+  hb-info: /usr/local/bin/hb-info
+  tjbench: /usr/local/bin/tjbench
+  shiftBed: /usr/local/bin/shiftBed
+  annotateBed: /usr/local/bin/annotateBed
+  bamToBed: /usr/local/bin/bamToBed
+  bamToFastq: /usr/local/bin/bamToFastq
+  bed12ToBed6: /usr/local/bin/bed12ToBed6
+  bedToBam: /usr/local/bin/bedToBam
+  bedToIgv: /usr/local/bin/bedToIgv
+  bedpeToBam: /usr/local/bin/bedpeToBam
+  bedtools: /usr/local/bin/bedtools
+  closestBed: /usr/local/bin/closestBed
+  clusterBed: /usr/local/bin/clusterBed
+  complementBed: /usr/local/bin/complementBed
+  coverageBed: /usr/local/bin/coverageBed
+  expandCols: /usr/local/bin/expandCols
+  fastaFromBed: /usr/local/bin/fastaFromBed
+  flankBed: /usr/local/bin/flankBed
+  genomeCoverageBed: /usr/local/bin/genomeCoverageBed
+  getOverlap: /usr/local/bin/getOverlap
+  groupBy: /usr/local/bin/groupBy
+  intersectBed: /usr/local/bin/intersectBed
+  linksBed: /usr/local/bin/linksBed
+  mapBed: /usr/local/bin/mapBed
+  maskFastaFromBed: /usr/local/bin/maskFastaFromBed

quay.io/biocontainers/transannot/container.yaml

@@ -0,0 +1,16 @@
+url: https://biocontainers.pro/tools/transannot
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for transannot
+latest:
+  1.fa9ebab--pl5321h6a68c12_0: sha256:4e32c47c5372096271de24bf9e49904dd63b7ca3adaeaaa908ed72f3f1e78b51
+tags:
+  1.fa9ebab--pl5321h6a68c12_0: sha256:4e32c47c5372096271de24bf9e49904dd63b7ca3adaeaaa908ed72f3f1e78b51
+docker: quay.io/biocontainers/transannot
+aliases:
+  transannot: /usr/local/bin/transannot
+  aria2c: /usr/local/bin/aria2c
+  gawk-5.1.0: /usr/local/bin/gawk-5.1.0
+  awk: /usr/local/bin/awk
+  gawk: /usr/local/bin/gawk
+  idn2: /usr/local/bin/idn2
+  wget: /usr/local/bin/wget