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Merge pull request #76 from singularityhub/update/containers-2022-12-01
[bot] update/containers-2022-12-01
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url: https://biocontainers.pro/tools/circrna_finder | ||
maintainer: '@vsoch' | ||
description: singularity registry hpc automated addition for circrna_finder | ||
latest: | ||
1.2--pl5321hdfd78af_0: sha256:caee621721cd157a319d54fa2af54a878f3cab9dc43eed69603cd2b0fb8f44ae | ||
tags: | ||
1.2--pl5321hdfd78af_0: sha256:caee621721cd157a319d54fa2af54a878f3cab9dc43eed69603cd2b0fb8f44ae | ||
docker: quay.io/biocontainers/circrna_finder | ||
aliases: | ||
filterCirc.awk: /usr/local/bin/filterCirc.awk | ||
filterSpliceSiteCircles.pl: /usr/local/bin/filterSpliceSiteCircles.pl | ||
nrForwardSplicedReads.pl: /usr/local/bin/nrForwardSplicedReads.pl | ||
postProcessStarAlignment.pl: /usr/local/bin/postProcessStarAlignment.pl | ||
runStar.pl: /usr/local/bin/runStar.pl | ||
starCirclesToBed.pl: /usr/local/bin/starCirclesToBed.pl | ||
basenc: /usr/local/bin/basenc | ||
b2sum: /usr/local/bin/b2sum | ||
base32: /usr/local/bin/base32 | ||
base64: /usr/local/bin/base64 | ||
basename: /usr/local/bin/basename | ||
cat: /usr/local/bin/cat | ||
chcon: /usr/local/bin/chcon | ||
chgrp: /usr/local/bin/chgrp | ||
chmod: /usr/local/bin/chmod | ||
chown: /usr/local/bin/chown | ||
chroot: /usr/local/bin/chroot | ||
cksum: /usr/local/bin/cksum | ||
comm: /usr/local/bin/comm | ||
cp: /usr/local/bin/cp | ||
csplit: /usr/local/bin/csplit | ||
cut: /usr/local/bin/cut | ||
date: /usr/local/bin/date | ||
dd: /usr/local/bin/dd | ||
df: /usr/local/bin/df | ||
dir: /usr/local/bin/dir | ||
dircolors: /usr/local/bin/dircolors | ||
dirname: /usr/local/bin/dirname | ||
du: /usr/local/bin/du | ||
echo: /usr/local/bin/echo | ||
env: /usr/local/bin/env |
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url: https://biocontainers.pro/tools/circtools | ||
maintainer: '@vsoch' | ||
description: singularity registry hpc automated addition for circtools | ||
latest: | ||
1.2.1--pyh7cba7a3_0: sha256:7317627874031c4c9924d40b76602662a2d400c9ee4c1c626998c287e5e7bd65 | ||
tags: | ||
1.2.1--pyh7cba7a3_0: sha256:7317627874031c4c9924d40b76602662a2d400c9ee4c1c626998c287e5e7bd65 | ||
docker: quay.io/biocontainers/circtools | ||
aliases: | ||
DCC: /usr/local/bin/DCC | ||
FUCHS: /usr/local/bin/FUCHS | ||
circtools: /usr/local/bin/circtools | ||
circtools_circtest_wrapper.R: /usr/local/bin/circtools_circtest_wrapper.R | ||
circtools_detect_write_skip_tracks.pl: /usr/local/bin/circtools_detect_write_skip_tracks.pl | ||
circtools_enrich_visualization.R: /usr/local/bin/circtools_enrich_visualization.R | ||
circtools_exon_wrapper.R: /usr/local/bin/circtools_exon_wrapper.R | ||
circtools_generate_flanking_introns.py: /usr/local/bin/circtools_generate_flanking_introns.py | ||
circtools_generate_intron_gtf.sh: /usr/local/bin/circtools_generate_intron_gtf.sh | ||
circtools_merge_enrich_results.sh: /usr/local/bin/circtools_merge_enrich_results.sh | ||
circtools_primex_formatter.R: /usr/local/bin/circtools_primex_formatter.R | ||
circtools_primex_wrapper.R: /usr/local/bin/circtools_primex_wrapper.R | ||
circtools_quickcheck_wrapper.R: /usr/local/bin/circtools_quickcheck_wrapper.R | ||
circtools_reconstruct_visualization.R: /usr/local/bin/circtools_reconstruct_visualization.R | ||
circtools_sirna_formatter.R: /usr/local/bin/circtools_sirna_formatter.R | ||
create_igv_script.py: /usr/local/bin/create_igv_script.py | ||
create_igv_script_from_gene_names.py: /usr/local/bin/create_igv_script_from_gene_names.py | ||
create_igv_script_from_position_list.py: /usr/local/bin/create_igv_script_from_position_list.py | ||
detect_new_exons_from_fuchs_data.py: /usr/local/bin/detect_new_exons_from_fuchs_data.py | ||
get_introns_from_ensembl.pl: /usr/local/bin/get_introns_from_ensembl.pl | ||
guided_denovo_circle_structure_parallel: /usr/local/bin/guided_denovo_circle_structure_parallel | ||
htseq-count-barcodes: /usr/local/bin/htseq-count-barcodes | ||
make_coverage_picture.R: /usr/local/bin/make_coverage_picture.R | ||
summarized_coverage_profiles.R: /usr/local/bin/summarized_coverage_profiles.R | ||
htseq-count: /usr/local/bin/htseq-count | ||
htseq-qa: /usr/local/bin/htseq-qa | ||
fonttools: /usr/local/bin/fonttools | ||
pyftmerge: /usr/local/bin/pyftmerge | ||
pyftsubset: /usr/local/bin/pyftsubset | ||
ttx: /usr/local/bin/ttx | ||
brotli: /usr/local/bin/brotli | ||
shiftBed: /usr/local/bin/shiftBed | ||
annotateBed: /usr/local/bin/annotateBed | ||
bamToBed: /usr/local/bin/bamToBed | ||
bamToFastq: /usr/local/bin/bamToFastq | ||
bed12ToBed6: /usr/local/bin/bed12ToBed6 | ||
bedToBam: /usr/local/bin/bedToBam | ||
bedToIgv: /usr/local/bin/bedToIgv | ||
bedpeToBam: /usr/local/bin/bedpeToBam | ||
bedtools: /usr/local/bin/bedtools | ||
closestBed: /usr/local/bin/closestBed | ||
clusterBed: /usr/local/bin/clusterBed | ||
complementBed: /usr/local/bin/complementBed | ||
coverageBed: /usr/local/bin/coverageBed | ||
expandCols: /usr/local/bin/expandCols | ||
fastaFromBed: /usr/local/bin/fastaFromBed | ||
flankBed: /usr/local/bin/flankBed | ||
genomeCoverageBed: /usr/local/bin/genomeCoverageBed | ||
getOverlap: /usr/local/bin/getOverlap |
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url: https://biocontainers.pro/tools/ciriquant | ||
maintainer: '@vsoch' | ||
description: singularity registry hpc automated addition for ciriquant | ||
latest: | ||
1.1.2--pyhdfd78af_1: sha256:bb17f17a4097078822ae961780fe332dd4f96c101459c8acd3bc207bb034f9c0 | ||
tags: | ||
1.1.2--pyhdfd78af_1: sha256:bb17f17a4097078822ae961780fe332dd4f96c101459c8acd3bc207bb034f9c0 | ||
docker: quay.io/biocontainers/ciriquant | ||
aliases: | ||
CIRI_DE: /usr/local/bin/CIRI_DE | ||
CIRI_DE_replicate: /usr/local/bin/CIRI_DE_replicate | ||
CIRIquant: /usr/local/bin/CIRIquant | ||
compare_HLA.py: /usr/local/bin/compare_HLA.py | ||
compare_HLA_Omixon.py: /usr/local/bin/compare_HLA_Omixon.py | ||
extract_Omixon_HLA.py: /usr/local/bin/extract_Omixon_HLA.py | ||
extract_exons.py: /usr/local/bin/extract_exons.py | ||
extract_splice_sites.py: /usr/local/bin/extract_splice_sites.py | ||
hisat2: /usr/local/bin/hisat2 | ||
hisat2-align-l: /usr/local/bin/hisat2-align-l | ||
hisat2-align-s: /usr/local/bin/hisat2-align-s | ||
hisat2-build: /usr/local/bin/hisat2-build | ||
hisat2-build-l: /usr/local/bin/hisat2-build-l | ||
hisat2-build-s: /usr/local/bin/hisat2-build-s | ||
hisat2-inspect: /usr/local/bin/hisat2-inspect | ||
hisat2-inspect-l: /usr/local/bin/hisat2-inspect-l | ||
hisat2-inspect-s: /usr/local/bin/hisat2-inspect-s | ||
hisat2_extract_exons.py: /usr/local/bin/hisat2_extract_exons.py | ||
hisat2_extract_snps_haplotypes_UCSC.py: /usr/local/bin/hisat2_extract_snps_haplotypes_UCSC.py | ||
hisat2_extract_snps_haplotypes_VCF.py: /usr/local/bin/hisat2_extract_snps_haplotypes_VCF.py | ||
hisat2_extract_splice_sites.py: /usr/local/bin/hisat2_extract_splice_sites.py | ||
hisat2_read_statistics.py: /usr/local/bin/hisat2_read_statistics.py | ||
hisat2_simulate_reads.py: /usr/local/bin/hisat2_simulate_reads.py | ||
hisatgenotype.py: /usr/local/bin/hisatgenotype.py | ||
hisatgenotype_HLA_genotyping_PGs.py: /usr/local/bin/hisatgenotype_HLA_genotyping_PGs.py | ||
hisatgenotype_build_genome.py: /usr/local/bin/hisatgenotype_build_genome.py | ||
hisatgenotype_convert_codis.py: /usr/local/bin/hisatgenotype_convert_codis.py | ||
hisatgenotype_extract_codis_data.py: /usr/local/bin/hisatgenotype_extract_codis_data.py | ||
hisatgenotype_extract_cyp_data.py: /usr/local/bin/hisatgenotype_extract_cyp_data.py | ||
hisatgenotype_extract_reads.py: /usr/local/bin/hisatgenotype_extract_reads.py | ||
hisatgenotype_extract_vars.py: /usr/local/bin/hisatgenotype_extract_vars.py | ||
hisatgenotype_hla_cyp.py: /usr/local/bin/hisatgenotype_hla_cyp.py | ||
hisatgenotype_locus.py: /usr/local/bin/hisatgenotype_locus.py | ||
hisatgenotype_locus_samples.py: /usr/local/bin/hisatgenotype_locus_samples.py | ||
prepDE.py: /usr/local/bin/prepDE.py | ||
prep_CIRIquant: /usr/local/bin/prep_CIRIquant | ||
run_extract_CP.sh: /usr/local/bin/run_extract_CP.sh | ||
run_extract_ILMN.sh: /usr/local/bin/run_extract_ILMN.sh | ||
run_genotype_build.sh: /usr/local/bin/run_genotype_build.sh | ||
run_hisat2_build.sh: /usr/local/bin/run_hisat2_build.sh | ||
run_type_CP.sh: /usr/local/bin/run_type_CP.sh | ||
stringtie: /usr/local/bin/stringtie | ||
qualfa2fq.pl: /usr/local/bin/qualfa2fq.pl | ||
xa2multi.pl: /usr/local/bin/xa2multi.pl | ||
bwa: /usr/local/bin/bwa | ||
f2py2: /usr/local/bin/f2py2 | ||
f2py2.7: /usr/local/bin/f2py2.7 | ||
python2-config: /usr/local/bin/python2-config | ||
python2.7-config: /usr/local/bin/python2.7-config | ||
python2: /usr/local/bin/python2 | ||
python2.7: /usr/local/bin/python2.7 | ||
idle: /usr/local/bin/idle | ||
python-config: /usr/local/bin/python-config | ||
smtpd.py: /usr/local/bin/smtpd.py | ||
ace2sam: /usr/local/bin/ace2sam | ||
blast2sam.pl: /usr/local/bin/blast2sam.pl | ||
bowtie2sam.pl: /usr/local/bin/bowtie2sam.pl | ||
export2sam.pl: /usr/local/bin/export2sam.pl | ||
interpolate_sam.pl: /usr/local/bin/interpolate_sam.pl | ||
maq2sam-long: /usr/local/bin/maq2sam-long | ||
maq2sam-short: /usr/local/bin/maq2sam-short | ||
md5fa: /usr/local/bin/md5fa | ||
md5sum-lite: /usr/local/bin/md5sum-lite | ||
plot-bamstats: /usr/local/bin/plot-bamstats | ||
psl2sam.pl: /usr/local/bin/psl2sam.pl | ||
sam2vcf.pl: /usr/local/bin/sam2vcf.pl | ||
samtools.pl: /usr/local/bin/samtools.pl |
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url: https://biocontainers.pro/tools/find_circ | ||
maintainer: '@vsoch' | ||
description: singularity registry hpc automated addition for find_circ | ||
latest: | ||
1.2--hdfd78af_0: sha256:0e46cf8c9e35df7bd9a662528382f3e228194d880c40bfd717d3c061ed87d500 | ||
tags: | ||
1.2--hdfd78af_0: sha256:0e46cf8c9e35df7bd9a662528382f3e228194d880c40bfd717d3c061ed87d500 | ||
docker: quay.io/biocontainers/find_circ | ||
aliases: | ||
cmp_bed.py: /usr/local/bin/cmp_bed.py | ||
find_circ.py: /usr/local/bin/find_circ.py | ||
maxlength.py: /usr/local/bin/maxlength.py | ||
merge_bed.py: /usr/local/bin/merge_bed.py | ||
unmapped2anchors.py: /usr/local/bin/unmapped2anchors.py | ||
f2py2: /usr/local/bin/f2py2 | ||
f2py2.7: /usr/local/bin/f2py2.7 | ||
python2-config: /usr/local/bin/python2-config | ||
python2.7-config: /usr/local/bin/python2.7-config | ||
python2: /usr/local/bin/python2 | ||
python2.7: /usr/local/bin/python2.7 | ||
idle: /usr/local/bin/idle | ||
python-config: /usr/local/bin/python-config | ||
smtpd.py: /usr/local/bin/smtpd.py |
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url: https://biocontainers.pro/tools/targetscan | ||
maintainer: '@vsoch' | ||
description: singularity registry hpc automated addition for targetscan | ||
latest: | ||
7.0--pl5321hdfd78af_0: sha256:766449d7116d75961221a8937ee2687a815992b1ea5d4bff008e98bf5f7e9ac4 | ||
tags: | ||
7.0--pl5321hdfd78af_0: sha256:766449d7116d75961221a8937ee2687a815992b1ea5d4bff008e98bf5f7e9ac4 | ||
docker: quay.io/biocontainers/targetscan | ||
aliases: | ||
targetscan_70.pl: /usr/local/bin/targetscan_70.pl | ||
perl5.32.1: /usr/local/bin/perl5.32.1 | ||
streamzip: /usr/local/bin/streamzip |