fix(dedup): wrong snakemake params supplied when post-filtered inputs…

… are empty (#232)
sims-lab · Nov 16, 2023 · 88a9095 · 88a9095
1 parent c02bd2c
commit 88a9095
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/capcruncher/pipeline/workflow/scripts/remove_duplicate_coordinates.py b/capcruncher/pipeline/workflow/scripts/remove_duplicate_coordinates.py
@@ -42,8 +42,8 @@
         logger.warning(f"Creating empty output directory: {outdir}")
         outdir.mkdir(parents=True, exist_ok=True)
 
-        logger.warning(f"Creating empty stats file: {snakemake.output.stats_read}")
-        pd.DataFrame().to_csv(snakemake.output.stats)
+        logger.warning(f"Creating empty stats file: {snakemake.output.statistics}")
+        pd.DataFrame().to_csv(snakemake.output.statistics)
 
 
 except Exception as e: