feat(packaging): Moved all configuration from setup.py to setup.cfg. (#…

…114)

* Added pyproject.toml

* Moved setup metadata to setup.cfg

* Replaced setup.py with stub

pyproject.toml

@@ -0,0 +1,6 @@
+[build-system]
+requires = [
+    "setuptools>=42",
+    "wheel"
+]
+build-backend = "setuptools.build_meta"

setup.cfg

@@ -0,0 +1,55 @@
+[metadata]
+name = capcruncher
+version = 0.1.1a0
+author = asmith
+author_email = [email protected]
+description = An end-to-end solution for processing Capture-C Tri-C and Tiled-C data
+long_description = file: README.md, LICENSE
+long_description_content_type = text/markdown
+license = GNU GENERAL PUBLIC LICENSE Version 3
+license_file = LICENSE
+url = https://github.com/sims-lab/CapCruncher.git
+classifiers = 
+        Development Status :: 2 - Pre-Alpha
+        Environment :: Console
+        Intended Audience :: Science/Research
+        Operating System :: POSIX :: Linux
+        License :: OSI Approved :: GNU General Public License v3 (GPLv3)
+        Topic :: Scientific/Engineering :: Bio-Informatics
+        Programming Language :: Python :: 3 :: Only
+        Programming Language :: Python :: Implementation :: CPython
+
+
+[options]
+zip_safe = False
+include_package_data = True
+packages = find:
+install_requires=
+        pandas>=1
+        pybedtools>=0.8.1
+        papermill>=2.1.1
+        plotly>=4.8.0
+        xopen>=0.7.3
+        pysam>=0.15.3
+        gevent
+        paramiko>=2.7.1
+        sqlalchemy>=1.3.18
+        cgatcore>=0.6.7
+        cooler
+        apsw
+        ruffus
+        drmaa
+        joblib
+        ipykernel
+        natsort
+        iced
+        click
+        ujson
+        xxhash
+
+[options.entry_points]
+console_scripts = capcruncher = capcruncher.cli:cli
+
+[options.extras_require]
+stats = diffxpy
+plotting = coolbox

setup.py

@@ -1,55 +1,3 @@
-from setuptools import setup, find_packages
+from setuptools import setup
 
-setup(
-    name="capcruncher",
-    version="0.1.1a0",
-    author="Alastair Smith",
-    author_email="[email protected]",
-    packages=find_packages(),
-    entry_points={
-        "console_scripts": [
-            "capcruncher = capcruncher.cli:cli",
-        ]
-    },
-    include_package_data=True,
-    url="https://github.com/sims-lab/CapCruncher.git",
-    license="LICENSE",
-    description="An end-to-end solution for processing Capture-C, Tri-C and Tiled-C data.",
-    long_description=open("README.md").read(),
-    long_description_content_type="text/markdown",
-    python_requires=">=3.8",
-    install_requires=[
-        "pandas>=1",
-        "pybedtools>=0.8.1",
-        "papermill>=2.1.1",
-        "plotly>=4.8.0",
-        "xopen>=0.7.3",
-        "pysam>=0.15.3",
-        "gevent",
-        "paramiko>=2.7.1",
-        "sqlalchemy>=1.3.18",
-        "cgatcore>=0.6.7",
-        "cooler",
-        "apsw",
-        "ruffus",
-        "drmaa",
-        "joblib",
-        "ipykernel",
-        "natsort",
-        "iced",
-        "click",
-        "ujson",
-        "xxhash",
-    ],
-    extras_require={"stats": ["diffxpy"], "plotting": ["coolbox",]},
-    classifiers=[
-        "Development Status :: 2 - Pre-Alpha",
-        "Environment :: Console",
-        "Intended Audience :: Science/Research",
-        "Operating System :: POSIX :: Linux",
-        "License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
-        "Topic :: Scientific/Engineering :: Bio-Informatics",
-        "Programming Language :: Python :: 3 :: Only",
-        "Programming Language :: Python :: Implementation :: CPython",
-    ],
-)
+setup()