Upgrading ConText component to FastContext within annotator UI (cf. a…

…nnotators issue ontoportal#28 : ontoportal-lirmm/annotators#28)

app/assets/javascripts/bp_annotator.js

@@ -90,11 +90,7 @@ function get_annotations() {
   params.expand_mappings = jQuery("#expand_mappings").is(':checked');
   params.ncbo_slice = (("ncbo_slice" in BP_CONFIG) ? BP_CONFIG.ncbo_slice : '');
 
-  params.negation = jQuery("#negation").is(':checked');
-  params.experiencer = jQuery("#experiencer").is(':checked');
-  params.temporality = jQuery("#temporality").is(':checked');
-  params.certainty = jQuery("#certainty").is(':checked');
-
+  params.negation = params.experiencer = params.temporality = params.certainty = params.fast_context = jQuery("#fast_context").is(':checked');
 
   params.score_threshold = jQuery("#score_threshold").val();
   params.confidence_threshold = jQuery("#confidence_threshold").val();

app/controllers/annotator_controller.rb

@@ -52,10 +52,7 @@ def create
                 :exclude_numbers => params[:exclude_numbers] ||= "false",  # service default is false
                 :whole_word_only => params[:whole_word_only] ||= "true", # service default is true
                 :exclude_synonyms => params[:exclude_synonyms] ||= "false",  # service default is false
-                :negation => params[:negation] ||= "false",  # service default is false
-                :experiencer => params[:experiencer] ||= "false",  # service default is false
-                :temporality => params[:temporality] ||= "false",  # service default is false
-                :certainty => params[:certainty] ||= "false",
+                :fast_context => params[:fast_context] ||= "false",  # service default is false
                 :score => params[:score],
                 :score_threshold => params[:score_threshold] ||=-1,
                 :confidence_threshold => params[:confidence_threshold] ||=-1,
@@ -74,10 +71,7 @@ def create
     query += "&score=" + options[:score] unless options[:score] == ""
     query += "&score_threshold=" + options[:score_threshold] unless options[:score] == "" or options[:score_threshold]==-1
     query += "&confidence_threshold=" + options[:confidence_threshold] unless options[:score] == "" or options[:confidence_threshold]==-1
-    query += "&negation=" + options[:negation] unless options[:negation].empty?
-    query += "&experiencer=" + options[:experiencer] unless options[:experiencer].empty?
-    query += "&temporality=" + options[:temporality] unless options[:temporality].empty?
-    query += "&certainty=" + options[:certainty] unless options[:certainty].empty?
+    query += "&fast_context=" + options[:fast_context] unless options[:fast_context].empty?
     query += "&ontologies=" + CGI.escape(options[:ontologies].join(',')) unless options[:ontologies].empty?
     query += "&semantic_types=" + options[:semantic_types].join(',') unless options[:semantic_types].empty?
     query += "&semantic_groups=" + options[:semantic_groups].join(',') unless options[:semantic_groups].empty?   

app/views/annotator/index.html.haml

@@ -58,26 +58,15 @@
           = check_box_tag :lemmatize, :all, false, :id => "lemmatize"
           = label_tag :lemmatize, "Lemmatize (beta)"
 
-      %div{:class => "panel panel-primary", :style => "width: 17em; display: inline-block; vertical-align: top; height: 256px;"}
+      %div{:class => "panel panel-primary", :style => "width: 20em; display: inline-block; vertical-align: top;"}
         %div{:class => "panel-heading"}
-          %h3{:class => "panel-title"} NegEx / ConText
+          %h3{:class => "panel-title"} FastContext
         %div{:class => "panel-body"}
-          %p{title: "Detect if a concept has been negated (affirmed, negated)", style: "margin-top: 40px;"}
-            = check_box_tag :negation, :all, false, :id => "negation"
-            = label_tag :negation, "Detect negation"
-            = help_icon("/annotator", {:title => "Detect if a concept has been negated (affirmed, negated, possible)"}).html_safe
-          %p{title: "Detect who experienced the found concept (patient, other)"}
-            = check_box_tag :experiencer, :all, false, :id => "experiencer"
-            = label_tag :experiencer, "Detect experiencer"
-            = help_icon("/annotator", {:title => "Detect who experienced the found concept (patient, other)"}).html_safe
-          %p{title: "Detect when the annotated concept occurred (recent, historical, hypothetical)"}
-            = check_box_tag :temporality, :all, false, :id => "temporality"
-            = label_tag :temporality, "Detect temporality"
-            = help_icon("/annotator", {:title => "Detect when the annotated concept occurred (recent, historical, hypothetical)"}).html_safe
-          %p{title: "Detect if the annotated concept is uncertain (certain, uncertain)"}
-            = check_box_tag :certainty, :all, false, :id => "certainty"
-            = label_tag :certainty, "Detect uncertainty"
-            = help_icon("/annotator", {:title => "Detect if an annotated concept is uncertain (certain, uncertain)"}).html_safe
+          - faxt_context_tooltip = "Enable FastContext to detect : if a concept has been negated (affirmed, negated), who experienced the found concept (patient, other), when the annotated concept occurred (recent, historical, hypothetical), and/or if the annotated concept is uncertain (certain, uncertain)"
+          %p{title: faxt_context_tooltip, style: ""}
+            = check_box_tag :fast_context, :all, false, :id => "fast_context"
+            = label_tag :fast_context, "Enable/disable FastContext"
+            = help_icon("/annotator", {:title => faxt_context_tooltip}).html_safe
 
     %div
       %b Ancestors Level: