Upgrading ConText component to FastContext within NCBO annotatorplus …

…UI (cf. annotators issue ontoportal#28 : ontoportal-lirmm/annotators#28). Fixing FastContext checkbox label within annotator UI.
sifrproject · Apr 22, 2020 · 0eec9a7 · 0eec9a7
1 parent f83fda5
commit 0eec9a7
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Showing 3 changed files with 11 additions and 18 deletions.
diff --git a/app/controllers/ncbo_annotatorplus_controller.rb b/app/controllers/ncbo_annotatorplus_controller.rb
@@ -44,9 +44,7 @@ def create
                 :exclude_numbers => params[:exclude_numbers] ||= "false",  # service default is false
                 :whole_word_only => params[:whole_word_only] ||= "true", # service default is true
                 :exclude_synonyms => params[:exclude_synonyms] ||= "false",  # service default is false
-                :negation => params[:negation] ||= "false",  # service default is false
-                :experiencer => params[:experiencer] ||= "false",  # service default is false
-                :temporality => params[:temporality] ||= "false",  # service default is false
+                :fast_context => params[:fast_context] ||= "false",  # service default is false
                 :score => params[:score],
                 :score_threshold => params[:score_threshold] ||=-1,
                 :confidence_threshold => params[:confidence_threshold] ||=-1,
@@ -63,9 +61,7 @@ def create
     query += "&score=" + options[:score] unless options[:score] == ""
     query += "&score_threshold=" + options[:score_threshold] unless options[:score] == "" or options[:score_threshold]==-1
     query += "&confidence_threshold=" + options[:confidence_threshold] unless options[:score] == "" or options[:confidence_threshold]==-1
-    query += "&negation=" + options[:negation] unless options[:negation].empty?
-    query += "&experiencer=" + options[:experiencer] unless options[:experiencer].empty?
-    query += "&temporality=" + options[:temporality] unless options[:temporality].empty?
+    query += "&fast_context=" + options[:fast_context] unless options[:fast_context].empty?
     query += "&ontologies=" + CGI.escape(options[:ontologies].join(',')) unless options[:ontologies].empty?
     query += "&semantic_types=" + options[:semantic_types].join(',') unless options[:semantic_types].empty?
     query += "&semantic_groups=" + options[:semantic_groups].join(',') unless options[:semantic_groups].empty?

diff --git a/app/views/annotator/index.html.haml b/app/views/annotator/index.html.haml
@@ -65,7 +65,7 @@
           - faxt_context_tooltip = "Enable FastContext to detect : if a concept has been negated (affirmed, negated), who experienced the found concept (patient, other), when the annotated concept occurred (recent, historical, hypothetical), and/or if the annotated concept is uncertain (certain, uncertain)"
           %p{title: faxt_context_tooltip, style: ""}
             = check_box_tag :fast_context, :all, false, :id => "fast_context"
-            = label_tag :fast_context, "Enable/disable FastContext"
+            = label_tag :fast_context, "Enable FastContext"
             = help_icon("/annotator", {:title => faxt_context_tooltip}).html_safe
 
     %div

diff --git a/app/views/ncbo_annotatorplus/index.html.haml b/app/views/ncbo_annotatorplus/index.html.haml
@@ -57,19 +57,15 @@
           = check_box_tag :exclude_synonyms, :all, false, :id => "exclude_synonyms"
           = label_tag :exclude_synonyms, "Exclude Synonyms"
 
-      %div{:class => "panel panel-primary", :style => "width: 17em; display: inline-block; vertical-align: top; height: 256px;"}
+      %div{:class => "panel panel-primary", :style => "width: 20em; display: inline-block; vertical-align: top;"}
         %div{:class => "panel-heading"}
-          %h3{:class => "panel-title"} NegEx / ConText
+          %h3{:class => "panel-title"} FastContext
         %div{:class => "panel-body"}
-          %p{title: "Detect if a concept has been negated (affirmed, negated, possible)", style: "margin-top: 40px;"}
-            = check_box_tag :negation, :all, false, :id => "negation"
-            = label_tag :negation, "Detect negation"
-          %p{title: "Detect who experienced the found concept (patient, other)"}
-            = check_box_tag :experiencer, :all, false, :id => "experiencer"
-            = label_tag :experiencer, "Detect experiencer"
-          %p{title: "Detect when the annotated concept occurred (recent, historical, hypothetical)"}
-            = check_box_tag :temporality, :all, false, :id => "temporality"
-            = label_tag :temporality, "Detect temporality"
+          - faxt_context_tooltip = "Enable FastContext to detect : if a concept has been negated (affirmed, negated), who experienced the found concept (patient, other), when the annotated concept occurred (recent, historical, hypothetical), and/or if the annotated concept is uncertain (certain, uncertain)"
+          %p{title: faxt_context_tooltip, style: ""}
+            = check_box_tag :fast_context, :all, false, :id => "fast_context"
+            = label_tag :fast_context, "Enable FastContext"
+            = help_icon("/annotator", {:title => faxt_context_tooltip}).html_safe
 
     %div
       %b Ancestors Level:
@@ -148,6 +144,7 @@
         %th Negation
         %th Experiencer
         %th Temporality
+        %th Certainty
     %tbody
   #download_links{:style => "margin-top: 1.5em;"}
     %p