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update(pkgdown): site config #75
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shawntz committed Nov 23, 2024
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9 changes: 5 additions & 4 deletions DESCRIPTION
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Package: eyeris
Type: Package
Title: Create and Run Flexible and Reproducible Pupillometry Preprocessing Pipelines
Title: eyeris
Version: 0.0.0.9000
Authors@R:
person(
given = c("Shawn", "Tyler"),
given = c("Shawn", "T."),
family = "Schwartz",
role = c("aut", "cre"),
email = "[email protected]",
comment = c(ORCID = "0000-0001-6444-8451")
)
Description: More about what it does (maybe more than one line)
Description: Create and Run Flexible and Reproducible Pupillometry Preprocessing Pipelines
More about what it does (maybe more than one line)
Use four spaces when indenting paragraphs within the Description.
Encoding: UTF-8
Depends:
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License: MIT + file LICENSE
Config/testthat/edition: 3
LazyData: true
URL: https://shawnschwartz.com/eyeris
URL: http://shawnschwartz.com/eyeris
BugReports: https://github.com/shawntz/eyeris/issues
9 changes: 5 additions & 4 deletions README.Rmd
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collapse = TRUE,
comment = "#>",
fig.path = "man/figures/README-",
out.width = "100%"
out.width = "100%",
fig.cap = "README FIGURE"
)
```

# `eyeris`: create and run flexible and reproducible pupillometry preprocessing pipelines in R <a href="http://shawnschwartz.com/eyeris/" title="eyeris website"><img src="man/figures/logo.png" align="right" height="139" alt="eyeris website" /></a>

<!-- badges: start -->
<a href="LICENSE.md" alt="MIT License"><img src="https://badgen.net/static/license/MIT/blue?icon=github" /></a>
<a href="https://github.com/shawntschwartz/eyeris/actions/workflows/build.yml/badge.svg" alt="R Package Build Status"><img src="https://github.com/shawntschwartz/eyeris/actions/workflows/build.yml/badge.svg" /></a>
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<a href="LICENSE.md" alt="MIT License"><img src="https://badgen.net/static/license/MIT/blue?icon=github" alt="MIT License Badge"/></a>
<a href="https://github.com/shawntschwartz/eyeris/actions/workflows/build.yml/badge.svg" alt="R Package Build Status"><img src="https://github.com/shawntschwartz/eyeris/actions/workflows/build.yml/badge.svg" alt="Package Build Status Badge" /></a>
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<!-- badges: end -->

<!-- The goal of eyeris is to ... -->
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86 changes: 80 additions & 6 deletions README.md
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<!-- badges: start -->

<a href="LICENSE.md" alt="MIT License"><img src="https://badgen.net/static/license/MIT/blue?icon=github" /></a>
<a href="https://github.com/shawntschwartz/eyeris/actions/workflows/build.yml/badge.svg" alt="R Package Build Status"><img src="https://github.com/shawntschwartz/eyeris/actions/workflows/build.yml/badge.svg" /></a>
<a href="https://github.com/shawntschwartz/eyeris/actions/workflows/linter.yml/badge.svg" alt="R Package Linter Status"><img src="https://github.com/shawntschwartz/eyeris/actions/workflows/linter.yml/badge.svg" /></a>
<a href="LICENSE.md" alt="MIT License"><img src="https://badgen.net/static/license/MIT/blue?icon=github" alt="MIT License Badge"/></a>
<a href="https://github.com/shawntschwartz/eyeris/actions/workflows/build.yml/badge.svg" alt="R Package Build Status"><img src="https://github.com/shawntschwartz/eyeris/actions/workflows/build.yml/badge.svg" alt="Package Build Status Badge" /></a>
<a href="https://github.com/shawntschwartz/eyeris/actions/workflows/linter.yml/badge.svg" alt="R Package Linter Status"><img src="https://github.com/shawntschwartz/eyeris/actions/workflows/linter.yml/badge.svg" alt="Package Linter Status Badge" /></a>
<!-- badges: end -->

<!-- The goal of eyeris is to ... -->
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#> ✔ [ OK ] - Running eyeris::zscore()
```

<img src="man/figures/README-glassbox-example-1.png" width="100%" />
<div class="figure">

<img src="man/figures/README-glassbox-example-1.png" alt="README FIGURE" width="100%" />
<p class="caption">

README FIGURE
</p>

</div>

### step-wise correction of pupillary signal

``` r
plot(eyeris_preproc)
```

<img src="man/figures/README-glassbox-plot-1.png" width="100%" /><img src="man/figures/README-glassbox-plot-2.png" width="100%" /><img src="man/figures/README-glassbox-plot-3.png" width="100%" /><img src="man/figures/README-glassbox-plot-4.png" width="100%" /><img src="man/figures/README-glassbox-plot-5.png" width="100%" />
<div class="figure">

<img src="man/figures/README-glassbox-plot-1.png" alt="README FIGURE" width="100%" />
<p class="caption">

README FIGURE
</p>

</div>

<div class="figure">

<img src="man/figures/README-glassbox-plot-2.png" alt="README FIGURE" width="100%" />
<p class="caption">

README FIGURE
</p>

</div>

<div class="figure">

<img src="man/figures/README-glassbox-plot-3.png" alt="README FIGURE" width="100%" />
<p class="caption">

README FIGURE
</p>

</div>

<div class="figure">

<img src="man/figures/README-glassbox-plot-4.png" alt="README FIGURE" width="100%" />
<p class="caption">

README FIGURE
</p>

</div>

<div class="figure">

<img src="man/figures/README-glassbox-plot-5.png" alt="README FIGURE" width="100%" />
<p class="caption">

README FIGURE
</p>

</div>

### final pre-post correction of pupillary signal (raw -\> preprocessed)

``` r
plot(eyeris_preproc, steps = c(1, 5), preview_window = c(0, 100000))
```

<img src="man/figures/README-timeseries-plot-1.png" width="100%" /><img src="man/figures/README-timeseries-plot-2.png" width="100%" />
<div class="figure">

<img src="man/figures/README-timeseries-plot-1.png" alt="README FIGURE" width="100%" />
<p class="caption">

README FIGURE
</p>

</div>

<div class="figure">

<img src="man/figures/README-timeseries-plot-2.png" alt="README FIGURE" width="100%" />
<p class="caption">

README FIGURE
</p>

</div>

# Comments, suggestions, questions, issues

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