chore: update readme layout

README.Rmd

@@ -53,25 +53,25 @@ to flexibly construct and compare different pipelines.
 
 We hope you enjoy! -shawn
 
-```{r example, fig.width=2.5, fig.height=5, out.width='25%', fig.align='left'}
-library(eyeris)
-
+```{r example, fig.width=2.5, fig.height=5, out.width='50%', fig.align='left'}
 set.seed(1)
 
+library(eyeris)
+
 demo_data <- system.file("extdata", "assocret.asc", package = "eyeris")
 
-eyeris_preproc <- glassbox(demo_data) # also try setting `interactive` to TRUE
+eyeris_preproc <- glassbox(demo_data, lpfilt = list(plot_freqz = TRUE))
 ```
 
 ### step-wise correction of pupillary signal
 
-```{r glassbox-plot, echo = FALSE, fig.width=12, fig.height=4, out.width="50%"}
+```{r glassbox-plot, echo=TRUE, fig.width=12, fig.height=4, out.width="100%"}
 plot(eyeris_preproc)
 ```
 
 ### final pre-post correction of pupillary signal (raw -> preprocessed)
 
-```{r timeseries-plot, echo = FALSE, fig.width=8, fig.height=5}
+```{r timeseries-plot, echo=TRUE, fig.width=8, fig.height=5}
 plot(eyeris_preproc, steps = c(1, 6), time_range = c(0, 100000))
 ```
 

README.md

@@ -45,13 +45,13 @@ compare different pipelines.
 We hope you enjoy! -shawn
 
 ``` r
-library(eyeris)
-
 set.seed(1)
 
+library(eyeris)
+
 demo_data <- system.file("extdata", "assocret.asc", package = "eyeris")
 
-eyeris_preproc <- glassbox(demo_data) # also try setting `interactive` to TRUE
+eyeris_preproc <- glassbox(demo_data, lpfilt = list(plot_freqz = TRUE))
 #> → Running load ...
 #> → Running deblink ...
 #> → Running detransient ...
@@ -62,14 +62,73 @@ eyeris_preproc <- glassbox(demo_data) # also try setting `interactive` to TRUE
 #> → Running zscore ...
 ```
 
-<img src="man/figures/README-example-1.png" width="25%" style="display: block; margin: auto auto auto 0;" />
+<img src="man/figures/README-example-1.png" width="50%" style="display: block; margin: auto auto auto 0;" />
 
 ### step-wise correction of pupillary signal
 
-<img src="man/figures/README-glassbox-plot-1.png" width="50%" /><img src="man/figures/README-glassbox-plot-2.png" width="50%" /><img src="man/figures/README-glassbox-plot-3.png" width="50%" /><img src="man/figures/README-glassbox-plot-4.png" width="50%" /><img src="man/figures/README-glassbox-plot-5.png" width="50%" /><img src="man/figures/README-glassbox-plot-6.png" width="50%" />
+``` r
+plot(eyeris_preproc)
+#> [1] 1
+#> [1] 2
+#> [1] 2
+#> [1] 2
+#> [1] 3
+#> [1] 2
+```
+
+<img src="man/figures/README-glassbox-plot-1.png" width="100%" />
+
+    #> [1] 1
+    #> [1] 2
+    #> [1] 2
+    #> [1] 2
+    #> [1] 3
+    #> [1] 2
+
+<img src="man/figures/README-glassbox-plot-2.png" width="100%" />
+
+    #> [1] 1
+    #> [1] 2
+    #> [1] 2
+    #> [1] 2
+    #> [1] 3
+    #> [1] 2
+
+<img src="man/figures/README-glassbox-plot-3.png" width="100%" />
+
+    #> [1] 1
+    #> [1] 2
+    #> [1] 2
+    #> [1] 2
+    #> [1] 3
+    #> [1] 2
+
+<img src="man/figures/README-glassbox-plot-4.png" width="100%" />
+
+    #> [1] 1
+    #> [1] 2
+    #> [1] 2
+    #> [1] 2
+    #> [1] 3
+    #> [1] 2
+
+<img src="man/figures/README-glassbox-plot-5.png" width="100%" />
+
+    #> [1] 1
+    #> [1] 2
+    #> [1] 2
+    #> [1] 2
+    #> [1] 3
+    #> [1] 2
+
+<img src="man/figures/README-glassbox-plot-6.png" width="100%" />
 
 ### final pre-post correction of pupillary signal (raw -\> preprocessed)
 
+``` r
+plot(eyeris_preproc, steps = c(1, 6), time_range = c(0, 100000))
+```
+
 <img src="man/figures/README-timeseries-plot-1.png" width="100%" /><img src="man/figures/README-timeseries-plot-2.png" width="100%" />
 
 # Comments, suggestions, questions, issues