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* A gcc specific compiler * A clang specific compiler
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | ||
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | ||
on: | ||
push: | ||
branches: [development, FIX-45-checks-on-macos] | ||
pull_request: | ||
branches: [development] | ||
|
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name: macOS-clang | ||
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permissions: read-all | ||
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jobs: | ||
R-CMD-check: | ||
runs-on: ${{ matrix.config.os }} | ||
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name: macOS-clang | ||
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strategy: | ||
fail-fast: false | ||
matrix: | ||
config: | ||
- {os: macos-latest, r: 'release'} | ||
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env: | ||
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
R_KEEP_PKG_SOURCE: yes | ||
|
||
steps: | ||
- uses: actions/checkout@v4 | ||
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- uses: r-lib/actions/setup-pandoc@v2 | ||
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- uses: r-lib/actions/setup-r@v2 | ||
with: | ||
r-version: ${{ matrix.config.r }} | ||
http-user-agent: ${{ matrix.config.http-user-agent }} | ||
use-public-rspm: true | ||
|
||
- uses: r-lib/actions/setup-r-dependencies@v2 | ||
with: | ||
extra-packages: any::rcmdcheck reticulate | ||
needs: check | ||
|
||
- uses: actions/setup-python@v4 | ||
with: | ||
python-version: "3.10.x" | ||
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- name: Setup venv with {reticulate} | ||
shell: Rscript {0} | ||
run: | | ||
path_to_python <- reticulate::virtualenv_create( | ||
envname = "r-reticulate", | ||
python = Sys.which("python"), # placed on PATH by the setup-python action | ||
packages = c( | ||
"numpy", | ||
"scipy", | ||
"torch", | ||
"torchmetrics", | ||
"scikit-learn", | ||
"imblearn" | ||
) | ||
) | ||
writeLines( | ||
sprintf("RETICULATE_PYTHON=%s", path_to_python), | ||
Sys.getenv("GITHUB_ENV") | ||
) | ||
- uses: r-lib/actions/check-r-package@v2 | ||
with: | ||
upload-snapshots: true | ||
build_args: 'c("--no-manual", "--compact-vignettes=gs+qpdf")' |
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Original file line number | Diff line number | Diff line change |
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@@ -0,0 +1,93 @@ | ||
# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | ||
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | ||
on: | ||
push: | ||
branches: [development, FIX-45-checks-on-macos] | ||
pull_request: | ||
branches: [development] | ||
|
||
name: macOS-gcc | ||
|
||
permissions: read-all | ||
|
||
jobs: | ||
R-CMD-check: | ||
runs-on: ${{ matrix.config.os }} | ||
|
||
name: macOS-gcc | ||
|
||
strategy: | ||
fail-fast: false | ||
matrix: | ||
config: | ||
- {os: macos-latest, r: 'release'} | ||
|
||
env: | ||
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
R_KEEP_PKG_SOURCE: yes | ||
|
||
steps: | ||
- uses: actions/checkout@v4 | ||
|
||
- uses: r-lib/actions/setup-pandoc@v2 | ||
|
||
- uses: r-lib/actions/setup-r@v2 | ||
with: | ||
r-version: ${{ matrix.config.r }} | ||
http-user-agent: ${{ matrix.config.http-user-agent }} | ||
use-public-rspm: true | ||
|
||
- name: Install GCC on macOS | ||
if: runner.os == 'macOS' | ||
run: | | ||
brew update | ||
brew install gcc | ||
- name: Set GCC as Default Compiler on macOS | ||
if: runner.os == 'macOS' | ||
run: | | ||
# Identify the installed GCC version | ||
GCC_VERSION=$(brew list gcc | grep bin/gcc- | head -n1 | sed 's#.*/gcc-##') | ||
echo "Detected GCC version: $GCC_VERSION" | ||
# Set CC and CXX environment variables | ||
echo "CC=$(brew --prefix gcc)/bin/gcc-$GCC_VERSION" >> $GITHUB_ENV | ||
echo "CXX=$(brew --prefix gcc)/bin/g++-$GCC_VERSION" >> $GITHUB_ENV | ||
echo "$(brew --prefix gcc)/bin" >> $GITHUB_PATH | ||
- uses: r-lib/actions/setup-r-dependencies@v2 | ||
with: | ||
extra-packages: any::rcmdcheck reticulate | ||
needs: check | ||
|
||
- uses: actions/setup-python@v4 | ||
with: | ||
python-version: "3.10.x" | ||
|
||
- name: Setup venv with {reticulate} | ||
shell: Rscript {0} | ||
run: | | ||
path_to_python <- reticulate::virtualenv_create( | ||
envname = "r-reticulate", | ||
python = Sys.which("python"), # placed on PATH by the setup-python action | ||
packages = c( | ||
"numpy", | ||
"scipy", | ||
"torch", | ||
"torchmetrics", | ||
"scikit-learn", | ||
"imblearn" | ||
) | ||
) | ||
writeLines( | ||
sprintf("RETICULATE_PYTHON=%s", path_to_python), | ||
Sys.getenv("GITHUB_ENV") | ||
) | ||
- uses: r-lib/actions/check-r-package@v2 | ||
with: | ||
upload-snapshots: true | ||
build_args: 'c("--no-manual", "--compact-vignettes=gs+qpdf")' |