📚 Quarto + Quaro Books for Documentation (#43) #196
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [development, documentation, OpenMP] | |
| pull_request: | |
| branches: [development, documentation, OpenMP] | |
| name: R-CMD-check | |
| permissions: read-all | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| # - {os: macos-latest, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'oldrel-1'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - name: Install system dependencies (Ubuntu only) | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y python3-venv | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck reticulate | |
| needs: check | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.10.x" | |
| - name: Setup venv with {reticulate} | |
| shell: Rscript {0} | |
| run: | | |
| path_to_python <- reticulate::virtualenv_create( | |
| envname = "r-reticulate", | |
| python = Sys.which("python"), # placed on PATH by the setup-python action | |
| packages = c( | |
| "numpy", | |
| "scipy", | |
| "torch", | |
| "torchmetrics", | |
| "scikit-learn", | |
| "imblearn" | |
| ) | |
| ) | |
| writeLines( | |
| sprintf("RETICULATE_PYTHON=%s", path_to_python), | |
| Sys.getenv("GITHUB_ENV") | |
| ) | |
| - name: Install GCC on macOS | |
| if: runner.os == 'macOS' | |
| run: | | |
| brew update | |
| brew install gcc | |
| - name: Set GCC as Default Compiler on macOS | |
| if: runner.os == 'macOS' | |
| run: | | |
| # Identify the installed GCC version | |
| GCC_VERSION=$(brew list gcc | grep bin/gcc- | head -n1 | sed 's#.*/gcc-##') | |
| echo "Detected GCC version: $GCC_VERSION" | |
| # Set CC and CXX environment variables | |
| echo "CC=$(brew --prefix gcc)/bin/gcc-$GCC_VERSION" >> $GITHUB_ENV | |
| echo "CXX=$(brew --prefix gcc)/bin/g++-$GCC_VERSION" >> $GITHUB_ENV | |
| # Optionally, add GCC to PATH | |
| echo "$(brew --prefix gcc)/bin" >> $GITHUB_PATH | |
| - uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| upload-snapshots: true | |
| build_args: 'c("--no-manual", "--compact-vignettes=gs+qpdf")' |