[MISC] automatic linting

seqan · Aug 16, 2024 · b671474 · b671474
1 parent 2caa8cb
commit b671474
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Showing 3 changed files with 20 additions and 23 deletions.
diff --git a/include/raptor/index.hpp b/include/raptor/index.hpp
@@ -10,12 +10,11 @@
 #pragma once
 
 #include <cereal/types/string.hpp>
+#include <cereal/types/vector.hpp>
 
 #include <sharg/exceptions.hpp>
 
 #include <hibf/hierarchical_interleaved_bloom_filter.hpp>
-#include <cereal/types/string.hpp>
-#include <cereal/types/vector.hpp>
 
 #include <raptor/argument_parsing/build_arguments.hpp>
 #include <raptor/strong_types.hpp>

diff --git a/src/argument_parsing/build_parsing.cpp b/src/argument_parsing/build_parsing.cpp
@@ -176,11 +176,14 @@ void init_build_parser(sharg::parser & parser, build_arguments & arguments)
                                     .description = "The number of hash functions to use.",
                                     .default_message = std::to_string(arguments.hash) + ", or read from layout file",
                                     .validator = sharg::arithmetic_range_validator{1, 5}});
-    parser.add_option(arguments.parts,
-                      sharg::config{.short_id = '\0',
-                                    .long_id = "parts",
-                                    .description = "Splits the index in this many parts. Not available for the HIBF. Needs to be set at layouting step.",
-                                    .validator = power_of_two_validator{}});
+    parser.add_option(
+        arguments.parts,
+        sharg::config{
+            .short_id = '\0',
+            .long_id = "parts",
+            .description =
+                "Splits the index in this many parts. Not available for the HIBF. Needs to be set at layouting step.",
+            .validator = power_of_two_validator{}});
 
     // GCOVR_EXCL_START
     // Adding additional cwl information that currently aren't supported by sharg and tdl.

diff --git a/test/unit/cli/search/search_partitioned_hibf_test.cpp b/test/unit/cli/search/search_partitioned_hibf_test.cpp
@@ -7,7 +7,9 @@
 
 #include <raptor/test/cli_test.hpp>
 
-struct search_partitioned_hibf : public raptor_base, public testing::WithParamInterface<std::tuple<size_t, size_t, size_t, size_t>>
+struct search_partitioned_hibf :
+    public raptor_base,
+    public testing::WithParamInterface<std::tuple<size_t, size_t, size_t, size_t>>
 {};
 
 TEST_P(search_partitioned_hibf, with_threshold)
@@ -53,13 +55,8 @@ TEST_P(search_partitioned_hibf, with_threshold)
     ASSERT_TRUE(std::filesystem::exists(layout_filename));
 
     { // build index
-        cli_test_result const result = execute_app("raptor",
-                                                   "build",
-                                                   "--output",
-                                                   index_filename,
-                                                   "--quiet",
-                                                   "--input",
-                                                   layout_filename);
+        cli_test_result const result =
+            execute_app("raptor", "build", "--output", index_filename, "--quiet", "--input", layout_filename);
 
         EXPECT_EQ(result.out, std::string{});
         EXPECT_EQ(result.err, std::string{});
@@ -130,13 +127,8 @@ TEST_P(search_partitioned_hibf, no_hits)
     ASSERT_TRUE(std::filesystem::exists(layout_filename));
 
     { // build index
-        cli_test_result const result = execute_app("raptor",
-                                                   "build",
-                                                   "--output",
-                                                   index_filename,
-                                                   "--quiet",
-                                                   "--input",
-                                                   layout_filename);
+        cli_test_result const result =
+            execute_app("raptor", "build", "--output", index_filename, "--quiet", "--input", layout_filename);
 
         EXPECT_EQ(result.out, std::string{});
         EXPECT_EQ(result.err, std::string{});
@@ -165,7 +157,10 @@ TEST_P(search_partitioned_hibf, no_hits)
 
 INSTANTIATE_TEST_SUITE_P(search_partitioned_hibf_suite,
                          search_partitioned_hibf,
-                         testing::Combine(testing::Values(16, 32), testing::Values(2, 4, 8), testing::Values(0, 1), testing::Values(0, 1, 2, 3, 4)),
+                         testing::Combine(testing::Values(16, 32),
+                                          testing::Values(2, 4, 8),
+                                          testing::Values(0, 1),
+                                          testing::Values(0, 1, 2, 3, 4)),
                          [](testing::TestParamInfo<search_partitioned_hibf::ParamType> const & info)
                          {
                              std::string name = std::to_string(std::max<int>(1, std::get<0>(info.param) * 4)) + "_bins_"