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Merge pull request #48 from hkim89/master
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Upgrade to the penalized version for FlxQTL
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hkim89 authored Jan 26, 2025
2 parents b94ba22 + a9258f3 commit a4555a3
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2 changes: 1 addition & 1 deletion Project.toml
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
name = "FlxQTL"
uuid = "ede81e08-c6d8-4fe3-94c2-f928d9d678ed"
authors = ["Hyeonju Kim <[email protected]>"]
version = "0.3.2"
version = "1.0.0"

[deps]
DelimitedFiles = "8bb1440f-4735-579b-a4ab-409b98df4dab"
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398 changes: 398 additions & 0 deletions data/Arabidopsis_genotypes_2d.csv
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4 comments on commit a4555a3

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@hkim89 hkim89 commented on a4555a3 Jan 26, 2025 •
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Release notes:

  • Version upgrade to v. 1.0.0 for numerical stability

Breaking changes

  • All existing scan functions and permutations have changed by running penalized log likelihood functions
  • New functions are included: gene1Scan, gene2Scan for pre-estimating a Kc matrix automatically inside, and getKc for separately precomputing Kc.
  • New keyword arguments for Inverse-Wishart prior distribution information are included, e.g. df_prior, Prior
  • Pkg documentation is updated accordingly

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Registration pull request created: JuliaRegistries/General/123737

Tip: Release Notes

Did you know you can add release notes too? Just add markdown formatted text underneath the comment after the text
"Release notes:" and it will be added to the registry PR, and if TagBot is installed it will also be added to the
release that TagBot creates. i.e.

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Release notes:

## Breaking changes

- blah

To add them here just re-invoke and the PR will be updated.

Tagging

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if the Julia TagBot GitHub Action is installed, or can be done manually through the github interface, or via:

git tag -a v1.0.0 -m "<description of version>" a4555a3e2e9bc079088ff9eff449809e45756249
git push origin v1.0.0

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@hkim89 hkim89 commented on a4555a3 Jan 26, 2025

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Release notes:

  • Version upgrade to v. 1.0.0 for numerical stability

Breaking changes

  • All existing scan functions and permutations have changed by running penalized log likelihood functions
  • New functions are included: gene1Scan, gene2Scan for pre-estimating a Kc matrix automatically inside, and getKc for separately precomputing Kc.
  • New keyword arguments for Inverse-Wishart prior distribution information are included, e.g. df_prior, Prior
  • Pkg documentation is updated accordingly

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Registration pull request updated: JuliaRegistries/General/123737

Tagging

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if the Julia TagBot GitHub Action is installed, or can be done manually through the github interface, or via:

git tag -a v1.0.0 -m "<description of version>" a4555a3e2e9bc079088ff9eff449809e45756249
git push origin v1.0.0

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