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v0.3.0 [Escherichia coli]

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@dileep-kishore dileep-kishore released this 30 Aug 20:44
· 1271 commits to master since this release
v0.3.0
f835ff0

Added

  • Network.__repr__ - object representation for the Network class
  • Network.json method to convert network to a JSON string
  • Network.write method to write network to a json file
  • Network.graph property to return the nx.Graph representation of the network
  • Network.load_json classmethod to load network from json file
  • ElistType - Schema for edgelist
  • NETWORK_CONVERTERS to convert networks to and from various formats
  • Network.load_elist classmethod to load network from edge list file

Changed

  • Type of "computational_metadata" to DictType(UnionType((StringType, FloatType)))
  • "computational_metadata" now includes 'interaction_threshold', 'pvalue_threshold' and 'pvalue_correction'
  • "abundance" is now not a required field for a node
  • Refactor network models into 'network_schema' module

Fixed

  • Type annotation for link_set in Network._create_network
  • Test data is now from the same source (all FMT datasets are from deblur)
  • Prevent re-correction of pvalues when loading from json or elist file
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