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StainVectorOpenCV.h
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StainVectorOpenCV.h
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/*=============================================================================
*
* Copyright (c) 2020 Sunnybrook Research Institute
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in all
* copies or substantial portions of the Software.
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
* SOFTWARE.
*
*=============================================================================*/
#ifndef SEDEEN_SRC_FILTER_STAINVECTOROPENCV_H
#define SEDEEN_SRC_FILTER_STAINVECTOROPENCV_H
#include "Global.h"
#include "Geometry.h"
#include "Image.h"
#include "StainVectorBase.h"
//OpenCV include
#include <opencv2/core/core.hpp>
namespace sedeen {
namespace image {
class PATHCORE_IMAGE_API StainVectorOpenCV : public StainVectorBase {
public:
StainVectorOpenCV(std::shared_ptr<tile::Factory> source);
virtual ~StainVectorOpenCV();
///Utility method to check the equality of the contents of two CV InputArrays (mat, vec, etc.)
static const bool AreEqual(cv::InputArray array1, cv::InputArray array2);
protected:
///Convert stain vector data as 9-element double C array to OpenCV matrix (as row vectors)
void StainCArrayToCVMat(double (&inutVectors)[9], cv::OutputArray outputData,
const bool normalize = false, const int _numRows = -1) const;
///Convert stain vector data from OpenCV matrix (as row vectors) to 9-element double C array
void StainCVMatToCArray(cv::InputArray inputData, double (&outputVectors)[9],
const bool normalize = false) const;
};
} // namespace image
} // namespace sedeen
#endif