sedeen-piip-plugins
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RoiCropper
RoiCropper PublicThis plugin extracts region of interest from pathology slides given their coordinates in an .xml file (by a pathologist) and save them in a separated image. It aslo creates corresponding mask based…
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StainAnalysis-plugin
StainAnalysis-plugin PublicThis plugin calculates the percentage area of a region of interest which has been stained using an IHC biomarker.
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TileExtraction_Plugin
TileExtraction_Plugin PublicTile extraction plug-in is useful for sampling a large image for training, auto-encoders applications etc... It works based on principles of stereology.
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Repositories
- StainAnalysis-plugin Public
This plugin calculates the percentage area of a region of interest which has been stained using an IHC biomarker.
sedeen-piip-plugins/StainAnalysis-plugin’s past year of commit activity - OpticalDensityThreshold Public
A Sedeen plugin that can apply thresholds based on optical density values
sedeen-piip-plugins/OpticalDensityThreshold’s past year of commit activity - CreateStainVectorProfile Public
Sedeen plugin to select stained regions using ROIs, and generate stain vector files from them
sedeen-piip-plugins/CreateStainVectorProfile’s past year of commit activity - ColorMap Public
ColorMap Sedeen plugin, to overlay an intensity/probability map over a whole-slide image
sedeen-piip-plugins/ColorMap’s past year of commit activity - RoiCropper Public
This plugin extracts region of interest from pathology slides given their coordinates in an .xml file (by a pathologist) and save them in a separated image. It aslo creates corresponding mask based on annotations in the region of interest.
sedeen-piip-plugins/RoiCropper’s past year of commit activity - TileExtraction_Plugin Public
Tile extraction plug-in is useful for sampling a large image for training, auto-encoders applications etc... It works based on principles of stereology.
sedeen-piip-plugins/TileExtraction_Plugin’s past year of commit activity
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