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@sedeen-piip-plugins

sedeen-piip-plugins

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  1. RoiCropper RoiCropper Public

    This plugin extracts region of interest from pathology slides given their coordinates in an .xml file (by a pathologist) and save them in a separated image. It aslo creates corresponding mask based…

    C++ 8 1

  2. StainAnalysis-plugin StainAnalysis-plugin Public

    This plugin calculates the percentage area of a region of interest which has been stained using an IHC biomarker.

    C++ 2 2

  3. out_of_focus out_of_focus Public

    This plugin detects out of focus regions in a slide.

    C++ 2 1

  4. TileExtraction_Plugin TileExtraction_Plugin Public

    Tile extraction plug-in is useful for sampling a large image for training, auto-encoders applications etc... It works based on principles of stereology.

    C++ 2 2

  5. RigidRegistration RigidRegistration Public

    Rigid registration of the images

    C++ 2 1

  6. HNCut HNCut Public

    This plugin quantifies biomarkers in histopathology image

    C++ 1 1

Repositories

Showing 10 of 15 repositories
  • StainAnalysis-plugin Public

    This plugin calculates the percentage area of a region of interest which has been stained using an IHC biomarker.

    sedeen-piip-plugins/StainAnalysis-plugin’s past year of commit activity
    C++ 2 MIT 2 0 0 Updated Mar 3, 2022
  • OpticalDensityThreshold Public

    A Sedeen plugin that can apply thresholds based on optical density values

    sedeen-piip-plugins/OpticalDensityThreshold’s past year of commit activity
    C++ 0 MIT 1 0 0 Updated Jul 12, 2021
  • StainEvaluation Public

    A plugin to compute the difference between an image and a reference

    sedeen-piip-plugins/StainEvaluation’s past year of commit activity
    0 MIT 0 0 0 Updated May 29, 2020
  • CreateStainVectorProfile Public

    Sedeen plugin to select stained regions using ROIs, and generate stain vector files from them

    sedeen-piip-plugins/CreateStainVectorProfile’s past year of commit activity
    C++ 1 MIT 2 1 0 Updated May 21, 2020
  • ColorMap Public

    ColorMap Sedeen plugin, to overlay an intensity/probability map over a whole-slide image

    sedeen-piip-plugins/ColorMap’s past year of commit activity
    C++ 1 MIT 1 0 0 Updated Dec 16, 2019
  • poly-loader Public

    A plugin to load a polygon overlay from a file

    sedeen-piip-plugins/poly-loader’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Oct 21, 2019
  • out_of_focus Public

    This plugin detects out of focus regions in a slide.

    sedeen-piip-plugins/out_of_focus’s past year of commit activity
    C++ 2 1 0 1 Updated Aug 5, 2019
  • RoiCropper Public

    This plugin extracts region of interest from pathology slides given their coordinates in an .xml file (by a pathologist) and save them in a separated image. It aslo creates corresponding mask based on annotations in the region of interest.

    sedeen-piip-plugins/RoiCropper’s past year of commit activity
    C++ 8 MIT 1 0 0 Updated Jun 4, 2019
  • TileExtraction_Plugin Public

    Tile extraction plug-in is useful for sampling a large image for training, auto-encoders applications etc... It works based on principles of stereology.

    sedeen-piip-plugins/TileExtraction_Plugin’s past year of commit activity
    C++ 2 MIT 2 0 0 Updated Jun 4, 2019
  • RigidRegistration Public

    Rigid registration of the images

    sedeen-piip-plugins/RigidRegistration’s past year of commit activity
    C++ 2 MIT 1 0 0 Updated Jun 4, 2019
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