Neuro-tools

A set of tools for the omaralab in Trinity College Dublin

Current contents

• Axona: Files related to reading Axona output.
• Clustering: Files related to clustering raw format Axona data using SpikeInterface.
• ControlScripts: Tutorial scripts for Med-PC Control.
• Generic: General files related to pulling files based on an excel list specifying locations and things like that.
• Keypress: A python script to time multiple keypresses - can be used for timing behavioural videos.
• MEDPC: A set of scripts in the Prolog style MEDPC language.
• MEDPCBinCount: A Python program custom designed for a reading a MEDPC output file and returning statistics based on the file contents. Could be modified to create other similar programs.
• OSF: Scripts using the CLI provided by OSF to simplify the upload process of large repositories to OSF without having to zip the folders.
• OperantBox: A DACQBASIC operant box controller system, or control scripts for the Axona system.
• med-pc-syntax: A simple extension for VS Code to support basics of MPC language.
• SIMURAN: Files for use with the SIMURAN github package

See also

We have extra scripts for a specific experiment to investigate Claustral function on GitHub.

We also have a utility package and python project template.