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add sustr and svstr to netcdf plotfile #229

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merged 1 commit into from
Jul 18, 2024
Merged

add sustr and svstr to netcdf plotfile #229

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22 changes: 22 additions & 0 deletions Source/IO/NCPlotFile.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -200,6 +200,8 @@ REMORA::WriteNCPlotFile_which(int lev, int which_subdomain,
ncf.def_var("zeta", NC_FLOAT, {nt_name, ny_s_name, nx_s_name});
ncf.def_var("ubar", NC_FLOAT, {nt_name, ny_u_name, nx_u_name});
ncf.def_var("vbar", NC_FLOAT, {nt_name, ny_v_name, nx_v_name});
ncf.def_var("sustr", NC_FLOAT, {nt_name, ny_u_name, nx_u_name});
ncf.def_var("svstr", NC_FLOAT, {nt_name, ny_v_name, nx_v_name});

// We are doing single-level writes but it doesn't have to be level 0
//
Expand Down Expand Up @@ -461,6 +463,16 @@ REMORA::WriteNCPlotFile_which(int lev, int which_subdomain,
nc_plot_var.put(tmp.dataPtr(), {local_start_nt,local_start_y,local_start_x},
{local_nt, local_ny, local_nx});
}
{
FArrayBox tmp;
tmp.resize(tmp_bx_2d,1,amrex::The_Pinned_Arena());
tmp.template copy<RunOn::Device>((*vec_sustr[lev])[mfi.index()],0,0,1);

auto nc_plot_var = ncf.var("sustr");
nc_plot_var.par_access(NC_COLLECTIVE);
nc_plot_var.put(tmp.dataPtr(), {local_start_nt,local_start_y,local_start_x},
{local_nt, local_ny, local_nx});
}
} // in subdomain
} // mfi

Expand Down Expand Up @@ -521,6 +533,16 @@ REMORA::WriteNCPlotFile_which(int lev, int which_subdomain,
nc_plot_var.put(tmp.dataPtr(), {local_start_nt,local_start_y,local_start_x},
{local_nt, local_ny, local_nx});
}
{
FArrayBox tmp;
tmp.resize(tmp_bx_2d,1,amrex::The_Pinned_Arena());
tmp.template copy<RunOn::Device>((*vec_svstr[lev])[mfi.index()],0,0,1);

auto nc_plot_var = ncf.var("svstr");
nc_plot_var.par_access(NC_COLLECTIVE);
nc_plot_var.put(tmp.dataPtr(), {local_start_nt,local_start_y,local_start_x},
{local_nt, local_ny, local_nx});
}

} // in subdomain
} // mfi
Expand Down
1 change: 1 addition & 0 deletions Source/REMORA.cpp
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Expand Up @@ -660,6 +660,7 @@ REMORA::init_only (int lev, Real time)
init_set_vmix(lev);
set_hmixcoef(lev);
set_coriolis(lev);
init_custom_smflux(geom[lev], time, *vec_sustr[lev], *vec_svstr[lev], solverChoice);

// Ensure that the face-based data are the same on both sides of a periodic domain.
// The data associated with the lower grid ID is considered the correct value.
Expand Down
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