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Extending gex_only option to Visium function #3278

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alexanderchang1
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Extended gex_only function to visium

  • Release notes not necessary because: not a big change

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codecov bot commented Oct 11, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 75.44%. Comparing base (8ce811a) to head (de75ed9).

Additional details and impacted files
@@           Coverage Diff           @@
##             main    #3278   +/-   ##
=======================================
  Coverage   75.44%   75.44%           
=======================================
  Files         113      113           
  Lines       13250    13250           
=======================================
  Hits         9997     9997           
  Misses       3253     3253           
Files with missing lines Coverage Δ
src/scanpy/readwrite.py 74.70% <100.00%> (ø)

@alexanderchang1
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Hi, I just wanted to follow up on this, we have a project that relies on this functionality that we're hoping to publish in the next two months. I've modified my own version of Scanpy to include this, but I would prefer to be able to just point at a specific version of scanpy in the requirements file when distributing our new package.

@alexanderchang1
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Hi,

Just wanted to bump this again.

@alexanderchang1
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@flying-sheep

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Closing in favor of a squidpy PR

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Can't read in protein antibody capture data
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