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Backport PR #2698 on branch 1.9.x (Fix for highly_variable_genes flavor=seurat modifying layer) #1252

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Backport PR #2698 on branch 1.9.x (Fix for highly_variable_genes flavor=seurat modifying layer)

Backport PR #2698 on branch 1.9.x (Fix for highly_variable_genes flavor=seurat modifying layer) #1252

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