Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add SC2Spa #113

Merged
merged 4 commits into from
Aug 1, 2023
Merged
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
23 changes: 23 additions & 0 deletions packages/SC2Spa/meta.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,23 @@
name: SC2Spa
description: |
SC2Spa is a deep learning-based tool for predicting the spatial coordinates of single cells based on transcriptome.
Two paired single cell and spatial transcriptomic datasets are required to run SC2Spa. SC2Spa is trained on a ST reference
dataset to learn the relationship of gene expression and spatial coordinates. The trained fully-connected neural network
can be used to predict the locations of a single cell with only the transcriptomic profile as input. The predicted locations
of single cells can be further used to study the communication of the single cells.
project_home: https://github.com/linbuliao/SC2Spa
documentation_home: https://sc2spa.readthedocs.io/
install:
pypi: SC2Spa
tags:
- spatial inference
- scRNA-seq
- spatial transcriptomics
- deep learning
- cell communication
license: BSD-3-Clause
version: v1.2
authors:
- Linbu Liao
- Kyoung Jae Won
test_command: pip install "." && pytest