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Add PILOT (#189)
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* Add  PILOT

* Update meta.yaml
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mehdijoodaki authored Aug 13, 2024
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name: PILOT
description: |
PILOT is a Python library for Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport.
project_home: https://github.com/CostaLab/PILOT
documentation_home: https://pilot.readthedocs.io/en/latest/api.html
tutorials_home: https://pilot.readthedocs.io/en/latest/
publications:
- 10.1038/s44320-023-00003-8
install:
conda_instructions: |
# Create a new conda environment with the required Python version and R base
conda create --name PILOT python=3.11.5 r-base
# Activate the new environment
conda activate PILOT
# Install the PILOT package from PyPI
pip install pilotpy
pypi: pilotpy
tags:
- multi-omics
- single-cell
- trajectory
- pathomics-data
- ot
- patient-level
license: MIT
version: v2.0.6
authors:
- Mehdi Joodaki
- Mina Shaigan
- Victor Parra
- Roman D. Bülow
- Christoph Kuppe
- David L. Hölscher
- Mingbo Cheng
- James S. Nagai
- Michaël Goedertier
- Nassim Bouteldja
- Vladimir Tesar
- Jonathan Barratt
- Ian S.D. Roberts
- Rosanna Coppo
- Rafael Kramann
- Peter Boor
- Ivan G. Costa
test_command: |
conda create --name PILOT python=3.11.5 r-base
conda activate PILOT
pip install pilotpy
conda install pytest
cd test && pytest test_pilot.py

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