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name: PILOT | ||
description: | | ||
PILOT is a Python library for Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport. | ||
project_home: https://github.com/CostaLab/PILOT | ||
documentation_home: https://pilot.readthedocs.io/en/latest/api.html | ||
tutorials_home: https://pilot.readthedocs.io/en/latest/ | ||
publications: | ||
- 10.1038/s44320-023-00003-8 | ||
install: | ||
conda_instructions: | | ||
# Create a new conda environment with the required Python version and R base | ||
conda create --name PILOT python=3.11.5 r-base | ||
# Activate the new environment | ||
conda activate PILOT | ||
# Install the PILOT package from PyPI | ||
pip install pilotpy | ||
pypi: pilotpy | ||
tags: | ||
- multi-omics | ||
- single-cell | ||
- trajectory | ||
- pathomics-data | ||
- ot | ||
- patient-level | ||
license: MIT | ||
version: v2.0.6 | ||
authors: | ||
- Mehdi Joodaki | ||
- Mina Shaigan | ||
- Victor Parra | ||
- Roman D. Bülow | ||
- Christoph Kuppe | ||
- David L. Hölscher | ||
- Mingbo Cheng | ||
- James S. Nagai | ||
- Michaël Goedertier | ||
- Nassim Bouteldja | ||
- Vladimir Tesar | ||
- Jonathan Barratt | ||
- Ian S.D. Roberts | ||
- Rosanna Coppo | ||
- Rafael Kramann | ||
- Peter Boor | ||
- Ivan G. Costa | ||
test_command: | | ||
conda create --name PILOT python=3.11.5 r-base | ||
conda activate PILOT | ||
pip install pilotpy | ||
conda install pytest | ||
cd test && pytest test_pilot.py |