Remove old deprecations and prepare 0.7rc1

anndata/_core/anndata.py

@@ -2005,69 +2005,6 @@ def chunk_X(
     # all of the following is for backwards compat
     # --------------------------------------------------------------------------
 
-    @property
-    @utils.deprecated("X")
-    def data(self):
-        return self.X
-
-    @data.setter
-    @utils.deprecated("X")
-    def data(self, value):
-        self.X = value
-
-    @property
-    @utils.deprecated("n_obs")
-    def n_smps(self):
-        return self.n_obs
-
-    @property
-    @utils.deprecated("obs")
-    def smp(self):
-        return self.obs
-
-    @smp.setter
-    @utils.deprecated("obs")
-    def smp(self, value):
-        self.obs = value
-
-    @property
-    @utils.deprecated("uns")
-    def add(self):
-        return self.uns
-
-    @add.setter
-    @utils.deprecated("uns")
-    def add(self, value):
-        self.uns = value
-
-    @property
-    @utils.deprecated("obsm")
-    def smpm(self):
-        return self.obsm
-
-    @smpm.setter
-    @utils.deprecated("obsm")
-    def smpm(self, value):
-        self.obsm = value
-
-    @property
-    @utils.deprecated("obs_names")
-    def smp_names(self):
-        return self.obs_names
-
-    @smp_names.setter
-    @utils.deprecated("obs_names")
-    def smp_names(self, names):
-        self.obs_names = names
-
-    @utils.deprecated("obs_keys")
-    def smp_keys(self):
-        return self.obs_keys()
-
-    @utils.deprecated("obsm_keys")
-    def smpm_keys(self):
-        return self.obsm_keys()
-
     @property
     @utils.deprecated("is_view")
     def isview(self):

docs/release_notes.rst

@@ -3,14 +3,25 @@
 .. role:: noteversion
 
 
-On Master :small:`July 29, 2019`
---------------------------------
+.. note::
+   Upcoming changes:
+
+   - :attr:`~anndata.AnnData.layers` and :attr:`~anndata.AnnData.X` will be unified.
+   - :attr:`~anndata.AnnData.filename` and :attr:`~anndata.AnnData.isbacked` will be unified under a new name.
+   - The types of :attr:`~anndata.AnnData.raw`, :attr:`~anndata.AnnData.layers`, :attr:`~anndata.AnnData.obsm`,
+     :attr:`~anndata.AnnData.varm`, :attr:`~anndata.AnnData.obsp` and :attr:`~anndata.AnnData.varp` will be exported.
+
+
+0.7rc1 :small:`December 23, 2019`
+---------------------------------
 
 .. warning::
-   Breaking changes on master include:
+   Breaking changes introduced between 0.6.22.post1 and 0.7rc1:
 
-   - Elements of :class:`~anndata.AnnData` objects don’t have their dimensionality reduced when the main object is subset. This is to maintain consistency when subsetting. See discussion in :issue:`145`.
+   - Elements of :class:`~anndata.AnnData`\ s don’t have their dimensionality reduced when the main object is subset.
+     This is to maintain consistency when subsetting. See discussion in :issue:`145`.
    - Internal modules like `anndata.core` are private and their contents are not stable: See :issue:`174`.
+   - The old deprecated attributes `.smp*`. `.add` and `.data` have been removed.
 
    Currently broken features