Merge branch 'master' of github.com:scilus/scilus_website

.github/workflows/build_website.yml

@@ -0,0 +1,46 @@
+name: scilus_website build
+
+on:
+  push:
+    branches:
+      - master
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  deploy:
+    runs-on: scil-website-runners
+
+    steps:
+      - name: Install dependancies
+        run: |
+          sudo apt-get update
+          sudo apt-get install -y \
+          git rsync
+
+      - name: Checkout repository
+        uses: actions/[email protected]
+        with:
+          submodules: ''
+
+      - name: Setup Hugo
+        uses: peaceiris/actions-hugo@v2
+        with:
+          hugo-version: '0.123.8'
+          extended: true
+
+      - name: Build
+        run: hugo -D -F -b "https://scil.usherbrooke.ca" -d scil.usherbrooke.ca
+
+      - name: rsync deployments
+        uses: burnett01/[email protected]
+        with:
+            switches: --delete -r
+            legacy_allow_rsa_hostkeys: "true"
+            path: scil.usherbrooke.ca/
+            remote_path: ${{ secrets.REMOTE_PATH }}
+            remote_host: ${{ secrets.REMOTE_HOST }}
+            remote_user: ${{ secrets.REMOTE_USER }}
+            remote_key: ${{ secrets.DEPLOY_KEY }}

README.md

@@ -4,6 +4,13 @@ SCIL website - GitHub
 
 - Teaching
 - Tools
+- Atlases
 - Publications
 - Gallery
 - Social networks
+
+# How to build the website (debug)
+
+Run the following commands:
+- sudo apt install hugo
+- hugo server

exampleSite/config/_default/config.toml → config/_default/config.toml

@@ -1,7 +1,7 @@
 ######################## default configuration ####################
 baseURL = "https://scil.usherbrooke.ca/"
 title = "SCIL"
-theme = "scilus_website"
+theme = "themefisher"
 # post pagination
 paginate = "3"
 # post excerpt

exampleSite/config/_default/menus.en.toml → config/_default/menus.en.toml

@@ -14,15 +14,30 @@ name = "Tools"
 url = "tools/"
 weight = 3
 
+[[main]]
+name = "Atlases"
+url = "atlases/"
+weight = 4
+
 [[main]]
 name = "Publications"
 url = "pages/publications"
-weight = 4
+weight = 5
 
 [[main]]
 name = "Gallery"
 url = "gallery/"
-weight = 5
+weight = 6
+
+[[main]]
+name = "Team"
+url = "pages/team"
+weight = 7
+
+[[main]]
+name = "Documentation"
+url = "https://scil-documentation.readthedocs.io/en/latest/"
+weight = 8
 
 # footer menu left
 # [[footer_left]]

exampleSite/content/english/_index.md → content/english/_index.md

@@ -11,7 +11,7 @@ banner:
 
 ##################### Feature ##########################
 feature:
-  enable : false
+  enable : false 
   title : "Something You Need To Know"
   feature_item:
     # feature item loop

content/english/atlases/_index.md

@@ -0,0 +1,30 @@
+---
+title: "SCIL Atlases"
+subtitle: ""
+# meta description
+description: "This is meta description"
+draft: false
+---
+
+
+## 
+
+The SCIL has created several bundle atlases that facilitate the extraction of specific bundles with precision.
+
+{{< faq "Arnold" >}}
+<img src="https://github.com/scilus/atlas_arnold/blob/main/doc/Figure_4.png?raw=true" alt="drawing" height="400"/>
+
+*Extraction of the Pulvino-temporal connectivity involved in the lexical retrieval process of picture naming into four fundamental fiber contingents.*
+
+ [![Repo](https://badgen.net/badge/icon/GitHub?icon=github&label)](https://github.com/scilus/atlas_arnold)
+ [![Repo](https://badgen.net/badge/icon/Paper?icon=medium&label)](https://pubmed.ncbi.nlm.nih.gov/38243610/)
+{{</ faq >}}
+
+{{< faq "RBX - BundleSeg" >}}
+<img src="https://i.ibb.co/n7Ln3Gf/mosaic-local.png" alt="drawing" height="400"/>
+
+*RBX/BundleSeg a reliable, reproducible, and fast method for extracting white matter pathways.*
+
+ [![Repo](https://badgen.net/badge/icon/GitHub?icon=github&label)](https://github.com/scilus/rbx_flow)
+ [![Repo](https://badgen.net/badge/icon/Paper?icon=medium&label)](https://link.springer.com/chapter/10.1007/978-3-031-47292-3_5)
+{{</ faq >}}

content/english/pages/team.md

@@ -0,0 +1,46 @@
+---
+title: "Team"
+date:
+type: ""
+# meta description
+description: ""
+# post draft
+draft: false
+---
+
+{{< team >}}
+
+### Students
+
+- Etienne Saint-Amant (master: 2011)
+- Michaël Bernier (master: 2012)
+- Arnaud Boré (master: 2012)
+- Caroline Presseau (master: 2014)
+- Samuel St-Jean (master: 2015)
+- Alexandre Gauvin (master: 2016)
+- Louis-Philippe Ledoux (master: 2017)
+- Gabriel Girard (master: 2013, PhD: 2016)
+- Maxime Chamberland (master: 2013, PhD: 2017)
+- Michaël Paquette (PhD: 2017)
+- François Rheault (PhD: 2020)
+- Étienne St-Onge (master: 2016, PhD: 2020)
+- Ann-Marie Beaudoin (master: 2021)
+- Anthony Gagnon (master: 2022)
+- Gabrielle Grenier (master: 2022)
+- Philippe Poulin (PhD: 2022)
+- Jasmeen Sidhu (PhD: 2022)
+- Guillaume Theaud (PhD: 2022)
+- Jon Haitz Legarreta Gorrono (PhD: 2023)
+- Sami Obaid
+
+### Co-direction
+
+- Vincent Méthot (master: 2016)
+- Marc-Alexandre Côté (master: 2012, PhD: 2017)
+- Alexandre Bizeau (master: 2017)
+- Matteo Batocchio (PhD: 2022)
+- Martin Cousineau (master: 2017)
+
+### Research assistant
+
+- Jean-Christophe Houde

data/members/masters.json

@@ -0,0 +1,16 @@
+{
+  "masters": [
+    {
+      "name": "Zineb El Yamani",
+      "linkedinId": "zineb-el-yamani-1a54491ba",
+      "githubId": "elyz081",
+      "mscStartYear" : 2024
+    },
+    {
+      "name": "Antoine Royer",
+      "linkedinId": "antoine-royer-079b651a4",
+      "githubId": "anroy1",
+      "mscStartYear": 2023
+    }
+  ]
+}

data/members/phds.json

@@ -0,0 +1,71 @@
+{
+  "phd": [
+    {
+      "name": "Antoine Théberge",
+      "websiteUrl": "https://www.antoinetheberge.ca/",
+      "scholarId": "m5GXCssAAAAJ",
+      "twitterId": "antoinetheb",
+      "linkedinId": "antoine-théberge-3a2509b3",
+      "githubId": "antoinetheb",
+      "phdStartYear": 2021
+    },
+    {
+      "name": "Emmanuelle Renauld",
+      "websiteUrl": "https://sites.google.com/site/renauldemmanuelle/home",
+      "scholarId": "",
+      "twitterId": "",
+      "linkedinId": "emmanuelle-renauld",
+      "githubId": "EmmaRenauld",
+      "phdStartYear": 2019
+    },
+    {
+      "name": "Philippe Karan",
+      "websiteUrl": "",
+      "scholarId": "WLMs7IMAAAAJ",
+      "twitterId": "",
+      "linkedinId": "philippe-karan",
+      "githubId": "karanphil",
+      "phdStartYear": 2021
+    },
+    {
+      "name": "Stanislas Thoumyre",
+      "linkedinId": "stanislas-thoumyre",
+      "githubId": "ThoumyreStanislas",
+      "phdStartYear": 2023
+    },
+    {
+      "name": "Anthony Gagnon",
+      "websiteUrl": "",
+      "scholarId": "gCJ7l3wAAAAJ",
+      "twitterId": "antogagnon33",
+      "linkedinId": "anthony-gagnon-847338170",
+      "githubId": "gagnonanthony",
+      "phdStartYear": 2023
+    },
+    {
+      "name": "Erick Hernandez Gutierrez",
+      "websiteUrl": "",
+      "scholarId": "",
+      "twitterId": "",
+      "linkedinId": "",
+      "githubId": "ErickHernandezGutierrez",
+      "phdStartYear": 2020
+    },
+    {
+      "name": "Charles Poirier",
+      "scholarId": "InSHWFUAAAAJ",
+      "twitterId": "CHrlS_98",
+      "githubId": "CHrlS98",
+      "phdStartYear": 2023
+    },
+    {
+      "name": "Alex Valcourt Caron",
+      "websiteUrl": "alexvcaron.github.io",
+      "scholarId": "H2QOv4sAAAAJ",
+      "twitterId": "AlexVCaron",
+      "linkedinId": "alex-valcourt-caron-545bb72b7",
+      "githubId": "AlexVCaron",
+      "phdStartYear": 2022
+    }
+  ]
+}

data/members/postdoc.json

@@ -0,0 +1,11 @@
+{
+    "postdoc": [
+      {
+        "name": "Graham Little",
+        "twitterId": "grahamlittlephd",
+        "githubId": "grahamlittlephd",
+        "postdocStartYear" : 2021
+      }
+    ]
+  }
+

data/members/professors.json

@@ -0,0 +1,20 @@
+{
+  "professors": [
+    {
+      "name": "Dr. Maxime Descoteaux",
+      "websiteUrl": "https://scil.usherbrooke.ca/pages/mdescoteaux",
+      "scholarId": "ohzG9ScAAAAJ",
+      "twitterId": "maxdescoteaux",
+      "linkedinId": "maxime-descoteaux-2445701",
+      "githubId": "mdesco"
+    },
+    {
+      "name": "Dr. François Rheault",
+      "websiteUrl": "https://www.usherbrooke.ca/informatique/nous-joindre/personnel/corps-professoral/professeurs/francois-rheault",
+      "scholarId": "IWMMMGsAAAAJ",
+      "twitterId": "FrancoisRheault",
+      "linkedinId": "francois-rheault-419153223",
+      "githubId": "frheault"
+    }
+  ]
+}

data/members/ra.json

@@ -0,0 +1,25 @@
+{
+  "RA": [
+    {
+      "name": "Arnaud Boré",
+      "githubId": "arnaudbore",
+      "scholarId": "yuYgGGQAAAAJ&hl",
+      "linkedinId": "arnaud-boré-22a26a1b"
+    },
+    {
+      "name": "Gabriel Girard",
+      "twitterId": "GabrielPGirard",
+      "githubId": "gabknight",
+      "scholarId": "-Zoh5mIAAAAJ",
+      "linkedinId": "gabrielgirard"
+    },
+    {
+      "name": "Manon Edde",
+      "websiteUrl": "",
+      "twitterId": "manonedde",
+      "githubId": "manonedde",
+      "scholarId": "Q_C7kL8AAAAJ",
+      "linkedinId": "manon-edde-5b1539b3"
+    }
+  ]
+}

layouts/partials/member.html

@@ -0,0 +1,16 @@
+<div class="col-md-4 col-sm-6 mb-4">
+  <div class="feature-card text-center" style="min-height:310px;">
+    <img src="https://github.com/{{.githubId}}.png" style="border-radius:50%;width:100px;height:100px;object-position:center;"></img><br />
+    <b>{{ .name }}</b> {{ if .title }} ({{ .title}}) {{end}} <br />
+    {{ if .mscStartYear}} Master: {{.mscStartYear}} - {{.mscEndYear}} <br /> {{ end }} 
+    {{ if .phdStartYear}} PhD: {{.phdStartYear}} - {{.phdEndYear}} <br /> {{ end }}
+    {{ if .postdocStartYear}} PostDoc: {{.postdocStartYear}} - {{.postdocEndYear}} <br /> {{ end }}
+    <hr>
+    {{ if .scholarId}} <a href="https://scholar.google.com/citations?user={{.scholarId}}"><i class="fa fa-book-open"></i></a>  {{ end }} 
+    {{ if .websiteUrl}} <a href="{{.websiteUrl}}"><i class="fa fa-id-badge"></i></a>  {{ end }} 
+    <a href="https://github.com/{{.githubId}}"><i class="fab fa-github"></i></a>
+    {{ if .twitterId}} <a href="https://x.com/{{.twitterId}}"><i class="fab fa-twitter"></i></a>  {{ end }} 
+    {{ if .linkedinId}} <a href="https://www.linkedin.com/in/{{.linkedinId}}"><i class="fab fa-linkedin"></i></a> {{ end }} <br />
+
+  </div>
+</div>

layouts/partials/team.html

@@ -0,0 +1 @@
+