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update links publication and containers
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arnaudbore committed Sep 18, 2024
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18 changes: 13 additions & 5 deletions content/english/pages/containers.md
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<style>
.highlight-link {
color: #007bff !important;
}
</style>

## List of singularity images

- <a href="containers/scilus_1.6.0.sif" download="containers/scilus_1.6.0.sif">scilus_1.6.0.sif</a>
- <a href="containers/scilus_2.0.2.sif" download="containers/scilus_2.0.2.sif" class="highlight-link">scilus_2.0.2.sif</a>

- <a href="containers/scilus_1.6.0.sif" download="containers/scilus_1.6.0.sif" class="highlight-link">scilus_1.6.0.sif</a>

- <a href="containers/scilus_1.5.0.sif" download="containers/scilus_1.5.0.sif">scilus_1.5.0.sif</a>
- <a href="containers/scilus_1.5.0.sif" download="containers/scilus_1.5.0.sif" class="highlight-link">scilus_1.5.0.sif</a>

- <a href="containers/scilus_1.4.2.sif" download="containers/scilus_1.4.2.sif">scilus_1.4.2.sif</a> ⚠️ **DEPRECATED**
- <a href="containers/scilus_1.4.2.sif" download="containers/scilus_1.4.2.sif" class="highlight-link">scilus_1.4.2.sif</a> ⚠️ **DEPRECATED**

- <a href="containers/scilus_1.3.0.sif" download="containers/scilus_1.3.0.sif">scilus_1.3.0.sif</a> ⚠️ **DEPRECATED**
- <a href="containers/scilus_1.3.0.sif" download="containers/scilus_1.3.0.sif" class="highlight-link">scilus_1.3.0.sif</a> ⚠️ **DEPRECATED**

- <a href="containers/tractoflow_2.2.1_b9a527_2021-04-13.sif" download="containers/tractoflow_2.2.1_b9a527_2021-04-13.sif">tractoflow_2.2.1_b9a527_2021-04-13.sif</a> ⚠️ **DEPRECATED**
- <a href="containers/tractoflow_2.2.1_b9a527_2021-04-13.sif" download="containers/tractoflow_2.2.1_b9a527_2021-04-13.sif" class="highlight-link">tractoflow_2.2.1_b9a527_2021-04-13.sif</a> ⚠️ **DEPRECATED**
2 changes: 1 addition & 1 deletion content/english/pages/mdescoteaux.md
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<img src="/images/maxime_descoteaux.jpg" alt="" width="90%">
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<div>
<p>Maxime DESCOTEAUX, PhD is Professor in Computer Science since 2009 at the Science Faculty of Sherbrooke University. In 2021, he became a member of the college of the Royal Society of Canada. He is the founder and director of the Sherbrooke Connectivity Imaging Laboratory <a href="http://scil.usherbroeoke.ca/" class="highlight-link"><i>(SCIL)</i></a>, where there are 10-15 graduate and medical students, and postdocs. He holds the Research Chair in NeuroInformatics and his research focuses on brain connectivity from state-of-the-art diffusion MRI and multi-modality acquisition, reconstruction, tractography, processing and visualization. The aim of the SCIL is to better understand structural connectivity, develop novel tractography algorithms, validate them and use them for human brain mapping and connectomics applications. Maxime Descoteaux did a post-doctorat fellow at <b>NeuroSpin</b> under the supervision of Cyril Poupon and Denis Le Bihan. He also obtained a PhD in Computer Science at <b>INRIA Sophia Antipolis</b> - Mediterranée, supervised by R. Deriche after he obtained a M.Sc under the supervision of K. Siddiqi in <b>Computer Science at Center for Intelligent Machines</b>, McGill University, where he also obtained a B.Sc, graduating from the joint honors <b>Mathematics</b> and Computer Science program. Pr Descoteaux holds the USherbrooke Institutional Research Chair in NeuroInformatics. He has been cited more than 12500+ times, his h/i-10index are 53/155 and has 150+ journal publications <a href="https://scholar.google.com/citations?user=ohzG9ScAAAAJ" class="highlight-link"><i>[google scholar]</i></a></p>
<p>Maxime DESCOTEAUX, PhD is Professor in Computer Science since 2009 at the Science Faculty of Sherbrooke University. In 2021, he became a member of the college of the Royal Society of Canada. He is the founder and director of the Sherbrooke Connectivity Imaging Laboratory <a href="http://scil.usherbrooke.ca/" class="highlight-link"><i>(SCIL)</i></a>, where there are 10-15 graduate and medical students, and postdocs. He holds the Research Chair in NeuroInformatics and his research focuses on brain connectivity from state-of-the-art diffusion MRI and multi-modality acquisition, reconstruction, tractography, processing and visualization. The aim of the SCIL is to better understand structural connectivity, develop novel tractography algorithms, validate them and use them for human brain mapping and connectomics applications. Maxime Descoteaux did a post-doctorat fellow at <b>NeuroSpin</b> under the supervision of Cyril Poupon and Denis Le Bihan. He also obtained a PhD in Computer Science at <b>INRIA Sophia Antipolis</b> - Mediterranée, supervised by R. Deriche after he obtained a M.Sc under the supervision of K. Siddiqi in <b>Computer Science at Center for Intelligent Machines</b>, McGill University, where he also obtained a B.Sc, graduating from the joint honors <b>Mathematics</b> and Computer Science program. Pr Descoteaux holds the USherbrooke Institutional Research Chair in NeuroInformatics. He has been cited more than 12500+ times, his h/i-10index are 53/155 and has 150+ journal publications <a href="https://scholar.google.com/citations?user=ohzG9ScAAAAJ" class="highlight-link"><i>[google scholar]</i></a></p>
</div>
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15 changes: 11 additions & 4 deletions content/english/pages/publications.md
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# post draft
draft: false
---
<style>
.highlight-link {
color: #007bff !important;
}
</style>


## Papers

PubMed list [link](https://pubmed.ncbi.nlm.nih.gov/?term=%22Descoteaux%20M.%22&sort=date) of papers published by Professor Maxime Descoteaux, Ph.D and the SCIL. And Google Scholar [link](https://scholar.google.com/citations?hl=en&user=ohzG9ScAAAAJ).
PubMed list <a href="https://pubmed.ncbi.nlm.nih.gov/?term=%22Descoteaux%20M.%22&sort=date" class="highlight-link">link</a> of papers published by Professor Maxime Descoteaux, Ph.D and the SCIL and Google Scholar <a href="https://scholar.google.com/citations?hl=en&user=ohzG9ScAAAAJ" class="highlight-link">link</a>.


## Thesis

All theses from the SCIL can be found at [UdS Savoir](https://savoirs.usherbrooke.ca/). Type the name of the student's name in the search bar. All PDFs are open-access.
All theses from the SCIL can be found at <a href="https://savoirs.usherbrooke.ca" class="highlight-link">UdeS Savoir</a>. Type the name of the student's name in the search bar. All PDFs are open-access.

[M. Descoteaux. **High Angular Resolution Diffusion MRI: from Local Estimation to Segmentation and Tractography**, 2008](https://www.dropbox.com/scl/fi/st6cko2ik5qjauhcu6ftp/DescoteauxPhDthesis.pdf?rlkey=2ucpt5m4hhoyukn83zmbpohek&dl=0)
<a href="https://www.dropbox.com/scl/fi/st6cko2ik5qjauhcu6ftp/DescoteauxPhDthesis.pdf?rlkey=2ucpt5m4hhoyukn83zmbpohek&dl=0" class="highlight-link">[link]</a> M. Descoteaux. **High Angular Resolution Diffusion MRI: from Local Estimation to Segmentation and Tractography**, 2008

[M. Descoteaux. **A Multi-Scale Geometric Flow for Segmenting Vasculature in MRI: Theory and Validation**, 2004](https://www.dropbox.com/scl/fi/vyppfr47ryzn5pnqi3wce/descoteaux_msc.pdf?rlkey=239em5mk3rnjguldp4hfsz0nv&dl=0)
<a href="https://www.dropbox.com/scl/fi/vyppfr47ryzn5pnqi3wce/descoteaux_msc.pdf?rlkey=239em5mk3rnjguldp4hfsz0nv&dl=0"
class="highlight-link">[link]</a> M. Descoteaux. **A Multi-Scale Geometric Flow for Segmenting Vasculature in MRI: Theory and Validation**, 2004



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