Add unit test

scilpy/gradients/bvec_bval_tools.py

@@ -73,6 +73,13 @@ def check_b0_threshold(min_bval, b0_thr, skip_b0_check):
         If True, and no b0 is found, only print a warning, do not raise
         an error.
 
+    Returns
+    -------
+    b0_thr: float
+        Either the unmodified b0_thr, or, in the case where the minimal b-value
+        is larger than b0_thr, and skip_b0_check is set to True, then returns
+        min_bval.
+
     Raises
     ------
     ValueError
@@ -93,7 +100,6 @@ def check_b0_threshold(min_bval, b0_thr, skip_b0_check):
 
     if min_bval > b0_thr:
         if skip_b0_check:
-            logging.warning("GOT {} > {}".format(min_bval, b0_thr))
             logging.warning(
                 'Your minimal bvalue ({}), is above the threshold ({})\n'
                 'Since --skip_b0_check was specified, the script will '

scilpy/gradients/tests/test_bvec_bval_tools.py

@@ -2,9 +2,9 @@
 import numpy as np
 
 from scilpy.gradients.bvec_bval_tools import (
-    identify_shells, is_normalized_bvecs, flip_gradient_sampling,
-    normalize_bvecs, round_bvals_to_shell, str_to_axis_index,
-    swap_gradient_axis)
+    check_b0_threshold, identify_shells, is_normalized_bvecs,
+    flip_gradient_sampling, normalize_bvecs, round_bvals_to_shell,
+    str_to_axis_index, swap_gradient_axis)
 
 bvecs = np.asarray([[1.0, 1.0, 1.0],
                     [1.0, 0.0, 1.0],
@@ -23,8 +23,16 @@ def test_normalize_bvecs():
 
 
 def test_check_b0_threshold():
-    # toDo To be modified (see PR#867).
-    pass
+    assert check_b0_threshold(min_bval=0, b0_thr=0, skip_b0_check=False) == 0
+    assert check_b0_threshold(min_bval=0, b0_thr=20, skip_b0_check=False) == 20
+    assert check_b0_threshold(min_bval=20, b0_thr=0, skip_b0_check=True) == 20
+
+    error_raised = False
+    try:
+        _ = check_b0_threshold(min_bval=20, b0_thr=0, skip_b0_check=False)
+    except ValueError:
+        error_raised = True
+    assert error_raised
 
 
 def test_identify_shells():