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[run] | ||
branch = True | ||
concurrency = multiprocessing | ||
data_file = .test_reports/.coverage | ||
source = | ||
scilpy/ | ||
scripts/ | ||
omit = | ||
scripts/tests/*.py | ||
scilpy/tests/**/*.py | ||
scilpy/**/tests/*.py | ||
scilpy/**/tests/**/*.py | ||
scripts/tests/*.py | ||
scripts/tests/**/*.py | ||
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[report] | ||
skip_empty = True | ||
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[html] | ||
title = Scilpy Coverage Report |
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@@ -51,6 +51,7 @@ htmlcov/ | |
nosetests.xml | ||
coverage.xml | ||
*,cover | ||
.test* | ||
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# Translations | ||
*.mo | ||
|
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3.10 | ||
3.10 |
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# Quick description | ||
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Please include a summary of the changes and the related issue(s) or improvement(s). | ||
Please also include relevant motivation and context. List any dependencies that are required for this change if needed. | ||
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... | ||
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## Type of change | ||
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Check the relevant options. | ||
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- [ ] Bug fix (non-breaking change which fixes an issue) | ||
- [ ] New feature (non-breaking change which adds functionality) | ||
- [ ] Breaking change (fix or feature that would cause existing functionality to not work as expected) | ||
- [ ] This change requires a documentation update | ||
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## Provide data, screenshots, command line to test (if relevant) | ||
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... | ||
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# Checklist | ||
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- [ ] My code follows the style guidelines of this project (run [autopep8](https://pypi.org/project/autopep8/)) | ||
- [ ] I added relevant citations to scripts, modules and functions docstrings and descriptions | ||
- [ ] I have performed a self-review of my code | ||
- [ ] I have commented my code, particularly in hard-to-understand areas | ||
- [ ] I have made corresponding changes to the documentation | ||
- [ ] My changes generate no new warnings | ||
- [ ] I moved all functions from the script file (except the argparser and main) to scilpy modules | ||
- [ ] I have added tests that prove my fix is effective or that my feature works | ||
- [ ] New and existing unit tests pass locally with my changes |
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@@ -1,34 +1,36 @@ | ||
bids-validator==1.9.* | ||
bids-validator==1.11.* | ||
bctpy==0.5.* | ||
bz2file==0.98.* | ||
coloredlogs==15.0.* | ||
cvxpy==1.3.* | ||
cvxpy==1.4.* | ||
cycler==0.11.* | ||
Cython==0.29.*, !=0.29.29 | ||
#dipy==1.7.* | ||
dipy==1.8.* | ||
deepdiff==6.3.0 | ||
dmri-amico==1.5.* | ||
dmri-commit==1.6.* | ||
dmri-amico==2.0.* | ||
dmri-commit==2.0.* | ||
docopt==0.6.* | ||
formulaic==0.3.* | ||
fury==0.8.* | ||
fury==0.9.* | ||
future==0.18.* | ||
GitPython==3.1.* | ||
h5py==3.7.* | ||
joblib==1.2.* | ||
kiwisolver==1.4.* | ||
matplotlib==3.6.* | ||
nibabel==4.0.* | ||
nibabel==5.2.* | ||
nilearn==0.9.* | ||
numpy==1.23.* | ||
openpyxl==3.0.* | ||
packaging == 23.2.* | ||
Pillow==10.0.* | ||
pybids==0.15.* | ||
pybids==0.16.* | ||
pyparsing==3.0.* | ||
PySocks==1.7.* | ||
pytest==7.2.* | ||
pytest-console-scripts==1.3.* | ||
pytest-cov==4.1.0 | ||
pytest-html==4.1.1 | ||
pytest-mock==3.10.* | ||
python-dateutil==2.8.* | ||
pytz==2022.6.* | ||
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statsmodels==0.13.* | ||
trimeshpy==0.0.3 | ||
vtk==9.2.* | ||
# Dipy requirements | ||
h5py>=2.8.0 | ||
tqdm>=4.30.0 | ||
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-e git+https://github.com/scilus/[email protected]#egg=dipy |
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