Merge pull request #907 from AlexVCaron/fix/simple_pipe_fix

[WIP] Fix coverage report paths

.coveragerc

@@ -1,11 +1,11 @@
 [run]
 branch = True
 concurrency = multiprocessing
-data_file = .test_reports/.coverage
-relative_files = True
-source_pkgs =
+data_file = .coverage
+source_pkgs = 
     scilpy
     scripts
+relative_files = True
 omit =
     scripts/tests/*.py
     scilpy/tests/**/*.py
@@ -16,6 +16,11 @@ omit =
 
 [report]
 skip_empty = True
+skip_covered = True
 
 [html]
 title = Scilpy Coverage Report
+directory = .test_reports/coverage.html
+
+[xml]
+output = .test_reports/coverage.xml

.github/workflows/test.yml

@@ -62,7 +62,6 @@ jobs:
           flags: unittests
           name: scilpy-unittests-${{ github.run_id }}
           verbose: true
-          directory: .test_reports/
           fail_ci_if_error: true
           plugin: pycoverage
 

pytest.ini

@@ -33,8 +33,7 @@ junit_logging = out-err
 
 addopts =
     --html=.test_reports/pytest.html
-    --cov-report=html:.test_reports/coverage.html
     --junit-xml=.test_reports/junit.xml
-    --cov-report=xml:.test_reports/coverage.xml
-    --cov=scilpy/
-    --cov=scripts/    
+    --cov
+    --cov-report html
+    --cov-report xml