Proper docker pull command

scilus · May 12, 2021 · a91b41d · a91b41d
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diff --git a/README.md b/README.md
@@ -34,14 +34,14 @@ Singularity/Docker
 -----------
 If you are on Linux, we recommend using the Singularity to run rbx_flow pipeline.
 If you have Singularity == 3.*, launch your Nextflow command with:
-`-with-singularity scilus-1.1.0_rbxflow-1.0.0.img`
+`-with-singularity scilus/scilus:1.1.0_rbxflow-1.0.0`
 
 If you have rebuild singularity Singularity == 2.* image is available [here](http://scil.dinf.usherbrooke.ca/en/containers_list/scilus-1.1.0_rbxflow-1.0.0.img)
 Launch your Nextflow command with: `-with-singularity ABSOLUTE_PATH/scilus-1.1.0_rbxflow-1.0.0.img`
 
 If you are on MacOS or Windows, we recommend using the Docker container to run rbx_flow pipeline.
 Launch your Nextflow command with:
-`-with-docker scilus-1.1.0_rbxflow-1.0.0.img`
+`-with-docker scilus/scilus:1.1.0_rbxflow-1.0.0`
 
 Usage
 -----

diff --git a/USAGE b/USAGE
@@ -5,8 +5,8 @@ USAGE
 
 nextflow run main.nf --input ... [OPTIONAL_ARGUMENTS]
 To call with a container add:
-    -with-singularity scilus-1.1.0_rbxflow-1.0.0.img
-    -with-docker scilus-1.1.0_rbxflow-1.0.0.img
+    -with-singularity scilus/scilus:1.1.0_rbxflow-1.0.0
+    -with-docker scilus/scilus:1.1.0_rbxflow-1.0.0
 
 The recommanded atlas is available at https://zenodo.org/record/4630660#.YJvmwXVKhdU