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[Improvement] add synthseg option to anatomical_segmentation #211

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@anroy1 anroy1 commented Sep 10, 2024

Describe your changes

Add the synthseg option to anatomical_segmentation

List test packages used by your module

  • T1w.zip
  • freesurfer_nifti.zip

Checklist before requesting a review

  • Create the tool:
    • Edit ./modules/nf-scil/<category>/<tool>/main.nf
    • Edit ./modules/nf-scil/<category>/<tool>/meta.yml
  • Generate the tests:
    • Edit ./tests/modules/nf-scil/<category>/<tool>/main.nf
    • Edit ./tests/modules/nf-scil/<category>/<tool>/nextflow.config
    • Add test data locally for tests with the fork repository
    • Generate the test infrastructure and md5sum for all outputs
  • Ensure the syntax is correct :
    • Check indentation abides with the rest of the library (don't hesitate to correct others !)
    • Lint everything. Ensure your variables have good names.

To Do

Pass synthseg module to run and debug tests

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