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[Module] Module Synthseg #186

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wants to merge 40 commits into from
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[Module] Module Synthseg #186

wants to merge 40 commits into from

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anroy1
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@anroy1 anroy1 commented Aug 2, 2024

Filling your PR description

add synth segmentation module from freesurfer 7.4.

List test packages used by your module

  • heavy.zip

Checklist before requesting a review

  • Create the tool:
    • Edit ./modules/nf-scil/<category>/<tool>/main.nf
    • Edit ./modules/nf-scil/<category>/<tool>/meta.yml
  • Generate the tests:
    • Edit ./tests/modules/nf-scil/<category>/<tool>/main.nf
    • Edit ./tests/modules/nf-scil/<category>/<tool>/nextflow.config
    • Add test data locally for tests with the fork repository
    • Generate the test infrastructure and md5sum for all outputs
  • Ensure the syntax is correct :
    • Check indentation abides with the rest of the library (don't hesitate to correct others !)
    • Lint everything. Ensure your variables have good names.

To Do

  • Use low resolution T1 for tests

@anroy1 anroy1 added WIP and removed WIP labels Aug 2, 2024
@anroy1 anroy1 force-pushed the synthseg branch 2 times, most recently from 00dd174 to 3e8ff86 Compare August 15, 2024 19:18
@anroy1 anroy1 changed the title [Module][WIP] Module Synthseg [Module] Module Synthseg Aug 29, 2024
@anroy1 anroy1 force-pushed the synthseg branch 2 times, most recently from 48d0cfc to 187c85e Compare September 7, 2024 18:04
…ata-treeview). also removed old node dependencies from the container installation
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3 participants