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[Subworkflow][WIP] Tractoflow#177

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AlexVCaron wants to merge 19 commits intomainscilus/nf-scil:mainfrom feat/tractoflowscilus/nf-scil:feat/tractoflowCopy head branch name to clipboard

+2,145-898

Commits

Commits on Jul 26, 2024

• Improvements to modules from nf-tractoflow

  AlexVCaron

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  28a3b83

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• Improvments to subworkflows from nf-tractoflow

  AlexVCaron

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  c729f9f

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• resnap tests

  AlexVCaron

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• replace thr by clip in eddy output, else we get a mask instead of a dwi

  AlexVCaron

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• Add support for lesions in anatomical segmentation workflow. still need testing

  AlexVCaron

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• fix tractoflow

  AlexVCaron

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  57e3fcf

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• fix meanfrf test

  AlexVCaron

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• fix anatomical_segmentation

  AlexVCaron

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• fix linting

  AlexVCaron

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Commits on Jul 27, 2024

• update to raw packages with names aligned with inner folder

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Commits on Jul 28, 2024

• upgrade denoising tests to subject20slices

  AlexVCaron

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• add new packages for accelerated testing

  AlexVCaron

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Commits on Jul 29, 2024

• speedup fodf tests

  AlexVCaron

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• speedup denoising tests

  AlexVCaron

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Commits on Jul 30, 2024

• first snapshots with new tractoflow, making it work in test. Updated much test packages to try further accelerate tests.

  AlexVCaron

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Commits on Aug 1, 2024

• bet tests on steroids

  AlexVCaron

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• always write test taps to github workflow results

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• antsbet 1 thread, see if it replicates, if so set it everywhere for it. Takes 10 minutes on 20 slices, but oh well, what can you ask from ants.

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• mppca tests single threaded for reproducibility

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