Skip to content

Commit

Permalink
revert tests assertion back to assertall
Browse files Browse the repository at this point in the history
  • Loading branch information
@anroy1
anroy1 committed Sep 4, 2024
1 parent f42f2a9 commit e69bd07
Show file tree
Hide file tree
Showing 2 changed files with 188 additions and 31 deletions.
17 changes: 2 additions & 15 deletions modules/nf-scil/segmentation/synthseg/tests/main.nf.test
View file
Original file line number Diff line number Diff line change
Expand Up @@ -44,12 +44,7 @@ nextflow_process {
then {
assertAll(
{ assert process.success },
{ assert snapshot(
Nifti_md5sum(process.out.wm_mask.get(0).get(1)),
Nifti_md5sum(process.out.gm_mask.get(0).get(1)),
Nifti_md5sum(process.out.csf_mask.get(0).get(1)),
process.out.versions
).match() }
{ assert snapshot(process.out).match() }
)
}
}
Expand All @@ -74,15 +69,7 @@ nextflow_process {
then {
assertAll(
{ assert process.success },
{ assert snapshot(
Nifti_md5sum(process.out.wm_mask.get(0).get(1)),
Nifti_md5sum(process.out.gm_mask.get(0).get(1)),
Nifti_md5sum(process.out.csf_mask.get(0).get(1)),
file(process.out.vol.get(0).get(1)),
file(process.out.qc.get(0).get(1)),
// Nifti_md5sum(process.out.resample.get(0).get(1)),
process.out.versions
).match() }
{ assert snapshot(process.out).match() }
)
}
}
Expand Down
202 changes: 186 additions & 16 deletions modules/nf-scil/segmentation/synthseg/tests/main.nf.test.snap
View file
Original file line number Diff line number Diff line change
@@ -1,34 +1,204 @@
{
"segmentation - synthseg - options": {
"content": [
"test__mask_wm.nii.gz:md5,42ac2ae7eab32edb16f230211e5e55c5",
"test__mask_gm.nii.gz:md5,7a205f13a6894200f0e1a4ea94447390",
"test__mask_csf.nii.gz:md5,7b6125a133adbaae10e94d95782c6678",
"test__vol.csv:md5,fe0078439655e81ab5777c73b4bd1edf",
"test__qc.csv:md5,ede51ac9221945293200793a46c15afa",
[
"versions.yml:md5,b65418e9ce2ab1cce590b1f659e18c1d"
]
{
"0": [
[
{
"id": "test",
"single_end": false
},
"test__mask_wm.nii.gz:md5,8ca305b46341552159e15e6974274358"
]
],
"1": [
[
{
"id": "test",
"single_end": false
},
"test__mask_gm.nii.gz:md5,c8c4f3027132011d98cf4a351230f519"
]
],
"2": [
[
{
"id": "test",
"single_end": false
},
"test__mask_csf.nii.gz:md5,1deff8b0b3d9f883b75bcd5c9f52f2c5"
]
],
"3": [

],
"4": [
[
{
"id": "test",
"single_end": false
},
"test__vol.csv:md5,fe0078439655e81ab5777c73b4bd1edf"
]
],
"5": [
[
{
"id": "test",
"single_end": false
},
"test__qc.csv:md5,ede51ac9221945293200793a46c15afa"
]
],
"6": [
"versions.yml:md5,b65418e9ce2ab1cce590b1f659e18c1d"
],
"csf_mask": [
[
{
"id": "test",
"single_end": false
},
"test__mask_csf.nii.gz:md5,1deff8b0b3d9f883b75bcd5c9f52f2c5"
]
],
"gm_mask": [
[
{
"id": "test",
"single_end": false
},
"test__mask_gm.nii.gz:md5,c8c4f3027132011d98cf4a351230f519"
]
],
"qc": [
[
{
"id": "test",
"single_end": false
},
"test__qc.csv:md5,ede51ac9221945293200793a46c15afa"
]
],
"resample": [

],
"versions": [
"versions.yml:md5,b65418e9ce2ab1cce590b1f659e18c1d"
],
"vol": [
[
{
"id": "test",
"single_end": false
},
"test__vol.csv:md5,fe0078439655e81ab5777c73b4bd1edf"
]
],
"wm_mask": [
[
{
"id": "test",
"single_end": false
},
"test__mask_wm.nii.gz:md5,8ca305b46341552159e15e6974274358"
]
]
}
],
"meta": {
"nf-test": "0.9.0-rc1",
"nextflow": "24.04.4"
},
"timestamp": "2024-08-16T19:58:49.946322"
"timestamp": "2024-09-01T17:39:23.266797"
},
"segmentation - synthseg - basic": {
"content": [
"test__mask_wm.nii.gz:md5,f35c2cd0f899d5a290083d09bac01670",
"test__mask_gm.nii.gz:md5,ef1aef14d90f78dcae60f3f73066af53",
"test__mask_csf.nii.gz:md5,fa08d8c09176d72b8f9b3667419c3d3e",
[
"versions.yml:md5,b65418e9ce2ab1cce590b1f659e18c1d"
]
{
"0": [
[
{
"id": "test",
"single_end": false
},
"test__mask_wm.nii.gz:md5,5aa95919bfa5b1dd2f8f7a0ae2667bfb"
]
],
"1": [
[
{
"id": "test",
"single_end": false
},
"test__mask_gm.nii.gz:md5,432d6a28a10823c0ca5b2f40d2353e2f"
]
],
"2": [
[
{
"id": "test",
"single_end": false
},
"test__mask_csf.nii.gz:md5,1307c8aeae9064d9a5108a01e918ffba"
]
],
"3": [

],
"4": [

],
"5": [

],
"6": [
"versions.yml:md5,b65418e9ce2ab1cce590b1f659e18c1d"
],
"csf_mask": [
[
{
"id": "test",
"single_end": false
},
"test__mask_csf.nii.gz:md5,1307c8aeae9064d9a5108a01e918ffba"
]
],
"gm_mask": [
[
{
"id": "test",
"single_end": false
},
"test__mask_gm.nii.gz:md5,432d6a28a10823c0ca5b2f40d2353e2f"
]
],
"qc": [

],
"resample": [

],
"versions": [
"versions.yml:md5,b65418e9ce2ab1cce590b1f659e18c1d"
],
"vol": [

],
"wm_mask": [
[
{
"id": "test",
"single_end": false
},
"test__mask_wm.nii.gz:md5,5aa95919bfa5b1dd2f8f7a0ae2667bfb"
]
]
}
],
"meta": {
"nf-test": "0.9.0-rc1",
"nextflow": "24.04.4"
},
"timestamp": "2024-08-16T19:58:09.501194"
"timestamp": "2024-09-01T17:38:47.563826"
}
}

0 comments on commit e69bd07

Please sign in to comment.