test alternate nft-nifti build

scilus · Aug 26, 2024 · 7bfb3ad · 7bfb3ad
1 parent 111dc6a
commit 7bfb3ad
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Showing 5 changed files with 123 additions and 651 deletions.
diff --git a/modules/nf-scil/reconst/dtimetrics/main.nf b/modules/nf-scil/reconst/dtimetrics/main.nf
@@ -64,7 +64,7 @@ process RECONST_DTIMETRICS {
     if ( task.ext.rd ) args += " --rd ${prefix}__rd.nii.gz"
     if ( task.ext.tensor ) args += " --tensor ${prefix}__tensor.nii.gz"
     if ( task.ext.nonphysical ) args += " --non-physical ${prefix}__nonphysical.nii.gz"
-    if ( task.ext.pulsation ) args += " --pulsation ${prefix}__pulsation_std_dwi.nii.gz"
+    if ( task.ext.pulsation ) args += " --pulsation ${prefix}__pulsation.nii.gz"
     if ( task.ext.residual ) args += " --residual ${prefix}__residual.nii.gz"
 
 

diff --git a/modules/nf-scil/reconst/dtimetrics/tests/main.nf.test b/modules/nf-scil/reconst/dtimetrics/tests/main.nf.test
@@ -46,7 +46,35 @@ nextflow_process {
         then {
             assertAll(
                 { assert process.success },
-                { assert snapshot(process.out).match() }
+                { assert snapshot(
+                    niftiMD5SUM(process.out.ad.get(0).get(1), 6),
+                    niftiMD5SUM(process.out.evecs.get(0).get(1), 6),
+                    niftiMD5SUM(process.out.evecs_v1.get(0).get(1), 6),
+                    niftiMD5SUM(process.out.evecs_v2.get(0).get(1), 6),
+                    niftiMD5SUM(process.out.evecs_v3.get(0).get(1), 6),
+                    niftiMD5SUM(process.out.evals.get(0).get(1), 6),
+                    niftiMD5SUM(process.out.evals_e1.get(0).get(1), 6),
+                    niftiMD5SUM(process.out.evals_e2.get(0).get(1), 6),
+                    niftiMD5SUM(process.out.evals_e3.get(0).get(1), 6),
+                    niftiMD5SUM(process.out.fa.get(0).get(1), 6),
+                    niftiMD5SUM(process.out.ga.get(0).get(1), 6),
+                    niftiMD5SUM(process.out.rgb.get(0).get(1), 6),
+                    niftiMD5SUM(process.out.md.get(0).get(1), 6),
+                    niftiMD5SUM(process.out.mode.get(0).get(1), 6),
+                    niftiMD5SUM(process.out.norm.get(0).get(1), 6),
+                    niftiMD5SUM(process.out.rd.get(0).get(1), 6),
+                    niftiMD5SUM(process.out.tensor.get(0).get(1), 6),
+                    niftiMD5SUM(process.out.nonphysical.get(0).get(1), 6),
+                    niftiMD5SUM(process.out.pulsation_std_dwi.get(0).get(1), 6),
+                    niftiMD5SUM(process.out.residual.get(0).get(1), 6),
+                    process.out.residual_iqr_residuals,
+                    process.out.residual_mean_residuals,
+                    process.out.residual_q1_residuals,
+                    process.out.residual_q3_residuals,
+                    process.out.residual_residuals_stats,
+                    process.out.residual_std_residuals,
+                    process.out.versions
+                ).match() }
             )
         }
 
@@ -75,9 +103,11 @@ nextflow_process {
         then {
             assertAll(
                 { assert process.success },
-                { assert snapshot(process.out).match() }
+                { assert snapshot(
+                    niftiMD5SUM(process.out.fa.get(0).get(1), 6),
+                    process.out.versions
+                ).match() }
             )
         }
-
     }
 }